PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s711561g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 548aa MW: 60605.2 Da PI: 6.3476

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s711561g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.4e-05	391	425	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++ L++++ + +K + a++L +A++YI+ Lq PDK_30s711561g001 391 LADKITALQQIVSPF-----GKTDTASVLHEAINYIRFLQ 425 678999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.429	375	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.99E-5	390	429	No hit	No description
SuperFamily	SSF47459	6.41E-10	390	438	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-9	390	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MATQEGSEAS VASSSTAPNN WWEVHANPLS SWNTMGRWQP PNPHSNSSCD EDISNTTTSF 60 TNTSNHSGLT MDSSSANLSG EPVENHLWSQ VLLNVGSGGD LHSNHDNGEN FLEVLTSKSL 120 TTEMFDPACD YLKKMDNSWE FTQPCSLNSL DKQLTSYNGS IMEPAERLTN LSDLVSNWSI 180 APPNPQLNPP STCNVSINPS MARYSTSNIS YIKHEIPNSP SYPGSGMGGD TNTSYVPCYD 240 HDTKEESQHH QDMGASMPSF LRPFSTNNIG HQIGVSNLLM GLNNKFCSGM TDVPWSNTRN 300 LSELISFTDS LNKPAVDLRA SKSYTKVSDS SDSKKQVFDN SSTRGNGRSS ATTSEGKKKR 360 SDDSSETLFK KSKHENSTTS SLKLQAPKVK LADKITALQQ IVSPFGKTDT ASVLHEAINY 420 IRFLQEQVQL LSDPYMKSGA SKDRNTWGVL ERTDKSEPKL DLRSRGLCLV PISCTPQAYR 480 DNNGPDYWMP TYRVVVKHCG TTTSAKRKKI TELVVEISIG VRNEIFVLNE LLMDQNFTLL 540 KEHPPWQN

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MATQEGSEAS VASSSTAPNN WWEVHANPLS SWNTMGRWQP PNPHSNSSCD EDISNTTTSF  60
TNTSNHSGLT MDSSSANLSG EPVENHLWSQ VLLNVGSGGD LHSNHDNGEN FLEVLTSKSL  120
TTEMFDPACD YLKKMDNSWE FTQPCSLNSL DKQLTSYNGS IMEPAERLTN LSDLVSNWSI  180
APPNPQLNPP STCNVSINPS MARYSTSNIS YIKHEIPNSP SYPGSGMGGD TNTSYVPCYD  240
HDTKEESQHH QDMGASMPSF LRPFSTNNIG HQIGVSNLLM GLNNKFCSGM TDVPWSNTRN  300
LSELISFTDS LNKPAVDLRA SKSYTKVSDS SDSKKQVFDN SSTRGNGRSS ATTSEGKKKR  360
SDDSSETLFK KSKHENSTTS SLKLQAPKVK LADKITALQQ IVSPFGKTDT ASVLHEAINY  420
IRFLQEQVQL LSDPYMKSGA SKDRNTWGVL ERTDKSEPKL DLRSRGLCLV PISCTPQAYR  480
DNNGPDYWMP TYRVVVKHCG TTTSAKRKKI TELVVEISIG VRNEIFVLNE LLMDQNFTLL  540
KEHPPWQN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008811082.1	0.0	transcription factor bHLH110
TrEMBL	A0A2H3ZAX3	0.0	A0A2H3ZAX3_PHODC; transcription factor bHLH110
STRING	XP_008811082.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7169	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	3e-48	bHLH family protein