PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s711191g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 1481aa    MW: 165872 Da    PI: 6.0703
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s711191g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS100.23e-311136239373
               GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                        ++v++ ea++ns+sF +rf+eal +ysa+fd l++ + r++++r+  E  +l++ i++++a+eg+er+ rh   + Wr+ + + G+ + +++
  PDK_30s711191g007   1 MTVMDVEAELNSPSFTNRFTEALFFYSAFFDYLASFMDRDDKTRMATEGSFLSQGIQSIIAAEGSERVVRHVGISVWRSFFARYGLVETEMN 92 
                        79****************************************************************************************** PP

               GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                        +    qa+ll ++++ ++  +++++ ++l+lgWk+ pL++vSaW
  PDK_30s711191g007  93 QWSRYQASLLGKQFAnGHFCTLDKNGKALTLGWKGTPLFFVSAW 136
                        ***************555468888888899************** PP
2GRAS224.74.5e-6924255525340
               GRAS  25 arlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.sseelaalkl...fsevsPilkfshltaNqaIleavegeer 111
                        ++ + l+s +g+p+qR+++yf+ AL++r++r++ +l+ ++ + +  + ++  + +l+a+ l   +++   + ++  +t  q+Il+ v+++++
  PDK_30s711191g007 242 KECRRLSSDTGNPVQRVVFYFADALQERINRETGGLCWKVpKDRGMTAQEvIKATLSAHPLqlaLHKKMLLRQIMEFTSMQTILDNVATARK 333
                        4567789************************988888777234444444433333444433558999999********************** PP

               GRAS 112 vHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                        +H iD++i++GlQW+ LlqaL++R+  +  +l+i +vg     s+e++ +tg+rL +fAe+lg+p +f+++++++++dl+ +++++++gEa+
  PDK_30s711191g007 334 IHLIDLSIKHGLQWVILLQALSTRStCPIDRLKISAVGL----SEEAITATGNRLVSFAEALGLPSSFKAVIVSDIKDLSEDMFELEEGEAI 421
                        *************************44556*********....9************************************************ PP

               GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                         V +++ + ++ +++  le+    v++++++l+P +++v++ ea++ns+sF +rf+eal y sa+fd l++ + r+++ ri vE  ll++ i
  PDK_30s711191g007 422 GVYSAMVMSSMIASPDILEN----VMRVIRKLKPCIMTVADVEAELNSPSFINRFTEALFYSSAFFDYLASFMDRDDKIRIAVEGSLLSQGI 509
                        ************88888888....******************************************************************** PP

               GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                        ++++a+eg+er+ rh   + Wr+ + + G+ + +++e  + qa+ll
  PDK_30s711191g007 510 RSIIATEGSERVVRHVGISVWRSFFARYGLVETEMNEWSYYQASLL 555
                        ****************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.1E-281136IPR005202Transcription factor GRAS
PROSITE profilePS5098516.2861116IPR005202Transcription factor GRAS
PROSITE profilePS5098535.683188569IPR005202Transcription factor GRAS
PfamPF035141.5E-66242555IPR005202Transcription factor GRAS
PROSITE profilePS51576203.994991481IPR025778Histone-lysine N-methyltransferase, EZ
SuperFamilySSF821997.72E-4013301452No hitNo description
Gene3DG3DSA:2.170.270.101.5E-4013331463No hitNo description
PROSITE profilePS5028013.8813341449IPR001214SET domain
SMARTSM003176.9E-3213341455IPR001214SET domain
PfamPF008563.4E-1113451448IPR001214SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031519Cellular ComponentPcG protein complex
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1481 aa     Download sequence    Send to blast
MTVMDVEAEL NSPSFTNRFT EALFFYSAFF DYLASFMDRD DKTRMATEGS FLSQGIQSII  60
AAEGSERVVR HVGISVWRSF FARYGLVETE MNQWSRYQAS LLGKQFANGH FCTLDKNGKA  120
LTLGWKGTPL FFVSAWNFQR RNDASKANLS LYLPTGLSRS SHGLLSGEKL NEPIDGVTYP  180
TGGGDELSTE EVIRIAVAHF VQMSTHKESD PRHRVGFSFL GLTNEEIKNV DLASLLLAAA  240
EKECRRLSSD TGNPVQRVVF YFADALQERI NRETGGLCWK VPKDRGMTAQ EVIKATLSAH  300
PLQLALHKKM LLRQIMEFTS MQTILDNVAT ARKIHLIDLS IKHGLQWVIL LQALSTRSTC  360
PIDRLKISAV GLSEEAITAT GNRLVSFAEA LGLPSSFKAV IVSDIKDLSE DMFELEEGEA  420
IGVYSAMVMS SMIASPDILE NVMRVIRKLK PCIMTVADVE AELNSPSFIN RFTEALFYSS  480
AFFDYLASFM DRDDKIRIAV EGSLLSQGIR SIIATEGSER VVRHVGISVW RSFFARYGLV  540
ETEMNEWSYY QASLLGTFRI NLERGREGVW ITLFALLHHA TKQSQAEERS DGEQGRQGIS  600
SLSSKLSQLK KQIQEARLVS IGAKLRENME NLKGHTLRLF DLAAAAEAAT RSSSAPPVPE  660
DKLSARMGNP LCRLTGSDVS NGVVEKEYLH IQEENLSSGT VLFGSNGSSK AAVRLVKLPF  720
VNKIPPYTAW IFLDKNQRMA EDQSVVGRRR IYYDPYGNEA LICSDSDEEI ADLEEEKHEF  780
SEGEDQILWK AIQEHGLHQD VLNILVLFID ATHSEIEERY ETLVEKHEKH EKNSEVSDKT  840
EPEERLFLNK TLNAALDSFD NLFCRRCLIF DCRLHGCSQN LIIPSEKLSN GFELEENRKP  900
CGDQCYLKRR DVRDPCNEDS NMSAVHEMES KALTEKVGAS LPSESEDSNP DDDNTNTTVV  960
EQVCNDVDRP VIVSSETAWT SRMLNPGATY DLDVATSEVS MKNLGKRKVL KHDNMSQEET  1020
ESAAEKCLAS ADKKQKKLTT SDVSQANDNP LDSHPISVED TKCPDSEASA ADQLQKKAID  1080
ESTENSSRTD TCVGNGSNTL EDVTNNTNKV SLLKNSFSSS QELTAHGWNT IEKDLYLKGI  1140
EIFGKNRYNV VEFLIAIPFY WTKDYVKRII IGLLYEEFLL SCLIARNLLC GMKTCLEVSN  1200
YMFNDGAAIP SRPVLTDSCL EESGKADQDY MEQDVPTRTR IWRKRGRARK LKYTWKSAGH  1260
PSIRKRIGDG QLACVLRAAR TALEDATVPR VSAEVGSVHA LRQGVNKIRK NNSSHCPLGL  1320
SNEHPLSETP CVRFKILLGR SDVAGWGAFI KNPVNKNDYL GEYTGELISH KEADKRGKIY  1380
DRANSSFLFD LNDQYVLDAY RKGDKLKFAN HSSNPNCYAK IMLVAGDHRV GIFAKEHIEA  1440
GEELFYDYRY GPDQAPAWAR KLDGSKRDDS LVSHSRAHKV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mi0_A1e-501336145595214Histone-lysine N-methyltransferase EZH2
4mi5_A1e-501336145597216Histone-lysine N-methyltransferase EZH2
5hyn_A4e-5011681450441728Histone-lysine N-methyltransferase EZH2
5hyn_F4e-5011681450441728Histone-lysine N-methyltransferase EZH2
5hyn_K4e-5011681450441728Histone-lysine N-methyltransferase EZH2
5hyn_Q4e-5011681450441728Histone-lysine N-methyltransferase EZH2
5ls6_A3e-5011681450390677Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2
5ls6_D3e-5011681450390677Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2
5ls6_G3e-5011681450390677Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2
5ls6_J3e-5011681450390677Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2
5wg6_A7e-5011681450401688Histone-lysine N-methyltransferase EZH2,Polycomb protein SUZ12 (E.C.2.1.1.43) chimera
5wg6_C7e-5011681450401688Histone-lysine N-methyltransferase EZH2,Polycomb protein SUZ12 (E.C.2.1.1.43) chimera
6c23_C4e-5011681450441728Histone-lysine N-methyltransferase EZH2
6c23_K4e-5011681450441728Histone-lysine N-methyltransferase EZH2
6c24_C4e-5011681450441728Histone-lysine N-methyltransferase EZH2
6c24_K4e-5011681450441728Histone-lysine N-methyltransferase EZH2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPolycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development (Probable). Involved in the regulation of flowering. Promotes flowering under short day (SD) conditions. Regulates the trimethylation on histone H3 'Lys-27' (H3K27me3) of the flowering regulator LF (PubMed:25400654). {ECO:0000269|PubMed:25400654, ECO:0000305|PubMed:25400654}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813375.10.0histone-lysine N-methyltransferase EZ1 isoform X1
SwissprotQ10MI40.0EZ1_ORYSJ; Histone-lysine N-methyltransferase EZ1
TrEMBLA0A2H3ZGB60.0A0A2H3ZGB6_PHODC; Histone-lysine N-methyltransferase
STRINGXP_008813375.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP172223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-42RGA-like 1
Publications ? help Back to Top
  1. Liang YK, et al.
    OsSET1, a novel SET-domain-containing gene from rice.
    J. Exp. Bot., 2003. 54(389): p. 1995-6
    [PMID:12815033]
  2. Thakur JK, et al.
    A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development.
    Gene, 2003. 314: p. 1-13
    [PMID:14527713]
  3. Luo M,Platten D,Chaudhury A,Peacock WJ,Dennis ES
    Expression, imprinting, and evolution of rice homologs of the polycomb group genes.
    Mol Plant, 2009. 2(4): p. 711-723
    [PMID:19825651]
  4. Zhang L, et al.
    Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.
    Plant Cell, 2012. 24(11): p. 4407-21
    [PMID:23150632]
  5. Nallamilli BR, et al.
    Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis.
    PLoS Genet., 2013. 9(3): p. e1003322
    [PMID:23505380]
  6. Lu Z,Huang X,Ouyang Y,Yao J
    Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice.
    PLoS ONE, 2013. 8(6): p. e65426
    [PMID:23762371]
  7. Liu X, et al.
    The rice enhancer of zeste [E(z)] genes SDG711 and SDG718 are respectively involved in long day and short day signaling to mediate the accurate photoperiod control of flowering time.
    Front Plant Sci, 2014. 5: p. 591
    [PMID:25400654]
  8. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  9. Huang X, et al.
    Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3.
    Plant J., 2016. 87(3): p. 305-17
    [PMID:27133784]
  10. Liu X, et al.
    Polycomb Protein OsFIE2 Affects Plant Height and Grain Yield in Rice.
    PLoS ONE, 2016. 11(10): p. e0164748
    [PMID:27764161]