PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s707661g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 698aa    MW: 76979.9 Da    PI: 6.8592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s707661g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-201871356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       + +++t++q++eLe++F+ +++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  PDK_30s707661g002 18 RCHRHTPKQIQELEAMFKVCPHPDEKQRMQLSRDLGLEARQIKFWFQNRRTQMK 71
                       33689**********************************************998 PP
2START171.65.1e-542124342206
                        HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        la +a++el+++++ +ep+Wv++     e +  +++ ++f++ +       +++ea+r+s+vv+m+++ lv  ++d + +W e ++    ka
  PDK_30s707661g002 212 LATRAMEELIRLIQTDEPLWVTVGrdrrEVLHLETYERIFPRPGQqfkyadFHTEASRDSTVVIMNSTALVDMFIDAS-KWAELFPtivsKA 302
                        57899******************988887777788888887655589*******************************.****9999999** PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        + +ev+s+g      g+l lm+ elq+lsp+ p R+f f+Ry+ q ++g w+ivdvSvd + +++      R+++lpSg+li++++ng+sk+
  PDK_30s707661g002 303 KNIEVLSTGiagsknGTLILMYGELQVLSPVIPtREFCFLRYCHQIQQGLWAIVDVSVDYPGENQL---TSRSQRLPSGCLIQDMPNGYSKI 391
                        ***************************************************************996...899999***************** PP

                        EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                        twveh++l++r   h+l+r lv sg+a+ga++w++tlqr ce+
  PDK_30s707661g002 392 TWVEHMELDKRNHtHQLYRNLVDSGMAFGAQRWLSTLQRMCER 434
                        ********998766***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-19873IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-211277IPR009057Homeodomain-like
PROSITE profilePS5007117.0541373IPR001356Homeobox domain
SMARTSM003893.0E-201477IPR001356Homeobox domain
CDDcd000861.28E-181574No hitNo description
PfamPF000464.0E-181871IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084850.773202437IPR002913START domain
SuperFamilySSF559611.43E-37204435No hitNo description
CDDcd088757.80E-112206433No hitNo description
SMARTSM002343.3E-45211434IPR002913START domain
PfamPF018521.2E-46212434IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-9264433IPR023393START-like domain
SuperFamilySSF559614.73E-16455678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MDSGDEPETL EQQGRKKRCH RHTPKQIQEL EAMFKVCPHP DEKQRMQLSR DLGLEARQIK  60
FWFQNRRTQM KAQHERAGNC TLRADNDKIR CENIAMKEAL KNAICPSCGG PPTNEDSYVD  120
EQKLRMENAR LKEELDRVSS FASKYLGRPV TQLPSVQPMA MSSLDLSMGG YSNPGPSSSI  180
DLDLLSGSSS TVMPFPFPAA VSEIEKPLMV DLATRAMEEL IRLIQTDEPL WVTVGRDRRE  240
VLHLETYERI FPRPGQQFKY ADFHTEASRD STVVIMNSTA LVDMFIDASK WAELFPTIVS  300
KAKNIEVLST GIAGSKNGTL ILMYGELQVL SPVIPTREFC FLRYCHQIQQ GLWAIVDVSV  360
DYPGENQLTS RSQRLPSGCL IQDMPNGYSK ITWVEHMELD KRNHTHQLYR NLVDSGMAFG  420
AQRWLSTLQR MCERFACLMV AGISSRDLGG VIPGPDGKRS MMMLAQRLVN NFCASITASN  480
NHGHKWTNPS GLTDVGVRLT IYRSPGPASH PSGLILSAAT SIWLPVPSQR VFSFLKDEKT  540
RAEWDVLSNG NSVQEVARIT NGSHPGNCIS LLRALNSAQS NMLILQESCI DASGSLVVYT  600
SIDLPSLNNV MSGEDPSNVP LLPSGFAILP DGQPVGGGAS TSSNPMGVTS GSLVTVLFQL  660
LVSSSPSAKL DIESVTTVTQ LISTTVQQMK AALNCPSI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787891.10.0homeobox-leucine zipper protein ROC8-like isoform X1
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3XS180.0A0A2H3XS18_PHODC; homeobox-leucine zipper protein ROC8-like isoform X1
STRINGXP_008787891.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11