PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s705821g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 724aa    MW: 84128.3 Da    PI: 8.2817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s705821g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-1520109199
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ffkvl   + +++  l++p  f+ ++  +    ++k  tl ++ g+sW+v++   ++ + + +++GW eF++a++Lk g f+vF+++g  +f
  PDK_30s705821g005  20 FFKVL--MHGFEEE-LRIPPAFI-KYiiD---LRGKRATLISPLGKSWSVRI--HGHNRNMCFREGWPEFARAHDLKMGFFMVFSYEGGGTF 102
                        78888..5566665.********.56253...35678***************..99999999***********************9885555 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                           ++vf++
  PDK_30s705821g005 103 --SFRVFDT 109
                        ..9999886 PP
2B367.71.7e-21181272599
                        -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++  +l+++ + +p +f e++ + +  +++++led +grsW+v+++ +++ +++ l++GW+eF+ + gL+egD ++F+l + ++ +++v++
  PDK_30s705821g005 181 IIKDQNLSKNYMNIPASFRESNHIAT--NQEVILEDVEGRSWRVRIC-NRGTKGVHLAQGWQEFCADTGLEEGDKCIFELASMKDNKMLVRI 269
                        56778899999********9998774..459***************5.44555577999********************9988********* PP

                        E-S CS
                 B3  97 frk 99 
                        f++
  PDK_30s705821g005 270 FKR 272
                        986 PP
3B363.53.2e-20348437199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+kv+   d   s+r+++pkkf+++++  +e s+ ++l+ +sg+ W v+l  ++  + +++ +GWk+Fv+++ +ke D +vFk++g+ +f  
  PDK_30s705821g005 348 FLKVM---DGDFSHRMTIPKKFVKNFK--EELSQNIQLKGPSGNLWHVRL--SNDAEDMIFDDGWKQFVEDHYIKEDDHLVFKYNGNLCF-- 430
                        56666...7788999********7776..56999****************..*********************************99999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         v +f++
  PDK_30s705821g005 431 SVLIFDQ 437
                        8988886 PP
4B341.72.1e-136347121699
                        EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++p+ fa+eh   ++e++++ l+ ++g + W++ + +  + g   l+k Wk+F+ +n+L+egD++vF+l+g  e  + v++fr+
  PDK_30s705821g005 634 ETIPNCFAAEHL--PRENQKIALRLPHGkKIWSMSYLH--YVGYSGLGKQWKQFALDNNLEEGDVCVFELTG--ELVMDVHIFRA 712
                        589********5..345669*******9788*****55..444445***********************987..66668888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-1916110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2016110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.16917110IPR003340B3 DNA binding domain
CDDcd100172.25E-1918108No hitNo description
PfamPF023625.3E-1320109IPR003340B3 DNA binding domain
SMARTSM010192.8E-1520110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-24172271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20175273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-15176271No hitNo description
PROSITE profilePS5086315.509177273IPR003340B3 DNA binding domain
SMARTSM010192.4E-14178273IPR003340B3 DNA binding domain
PfamPF023624.8E-19182272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-25343440IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.833345438IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-24346443IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-21347436No hitNo description
PfamPF023626.5E-18348437IPR003340B3 DNA binding domain
SMARTSM010199.5E-17348438IPR003340B3 DNA binding domain
SMARTSM010194.1E-10621713IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-19632711IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-19634712IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-15635711No hitNo description
PfamPF023624.7E-11635712IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223636713IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MDPCPEMVQD RDGGAQKPEF FKVLMHGFEE ELRIPPAFIK YIIDLRGKRA TLISPLGKSW  60
SVRIHGHNRN MCFREGWPEF ARAHDLKMGF FMVFSYEGGG TFSFRVFDTN ASLKNYGPIG  120
VQTVGHEDIN QDLNSKNDSE DMIQRPEMQV SIRQMRMKDG GEMSTERKCS YCSRRKSFEA  180
IIKDQNLSKN YMNIPASFRE SNHIATNQEV ILEDVEGRSW RVRICNRGTK GVHLAQGWQE  240
FCADTGLEEG DKCIFELASM KDNKMLVRIF KRLNWNEFHK LDLVLGLSCK KSKHLREHFQ  300
KYSVLYHQTI IIKLHLRRSS GMEQRCSRCM NWEEHCYWDH FEKTRIHFLK VMDGDFSHRM  360
TIPKKFVKNF KEELSQNIQL KGPSGNLWHV RLSNDAEDMI FDDGWKQFVE DHYIKEDDHL  420
VFKYNGNLCF SVLIFDQNGC EKEACYFVKD PKDKANESCQ SGKEIMDDSL EIIHEFLPPK  480
AHSPCSSKIF CNDRKQMRRL SAPRKLPQVN DDISDNILSV KSTNPKRKIR DDNFSSDSVN  540
ENEFAICLKN VMIRSSSCLV LFLVTQNSIN YLMIQSFINY LITMSRLLAS MVCHTAWYGA  600
HGTGRKSVQN IPSSRYKLRT IRTEVYQPVP RCTETIPNCF AAEHLPRENQ KIALRLPHGK  660
KIWSMSYLHY VGYSGLGKQW KQFALDNNLE EGDVCVFELT GELVMDVHIF RAVNDTTLPS  720
RVSN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786201.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2H3XN020.0A0A2H3XN02_PHODC; putative B3 domain-containing protein Os03g0621600
STRINGXP_008786201.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-29B3 family protein