PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s705771g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 228aa    MW: 24892.7 Da    PI: 7.0534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s705771g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002986108123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C + F ++  L  H++ H
  PDK_30s705771g005  86 FSCNYCQRKFFSSQALGGHQNAH 108
                        89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-683113No hitNo description
PROSITE profilePS5015711.34486113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNTYNHEASE DVSEVSSPVA SNISIQESFQ CHNKKDPAIS LQPMSLDLSL TVKAVSSSAA  60
VISFSSTSES SSEARACNVP NPQRVFSCNY CQRKFFSSQA LGGHQNAHKR ERTLAKWALR  120
MDAFPYTYAS IASLPLHGSA LHSLGIEAHS STHQGMVEKK ESRSGSKIHR GLHGSMPVFV  180
ADDDANFYWP GSFRPLANSG FELLGNSNFN CVASDPRPVE EPDLTLRL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776604.11e-169zinc finger protein 4-like
RefseqXP_008798432.11e-169zinc finger protein 4-like
RefseqXP_017695985.11e-169zinc finger protein 4-like
RefseqXP_017699688.11e-169zinc finger protein 4-like
SwissprotQ392631e-34ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A2H3YGF81e-168A0A2H3YGF8_PHODC; zinc finger protein 4-like
STRINGXP_008776604.11e-168(Phoenix dactylifera)
STRINGXP_008798432.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-36zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]