PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s704941g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 572aa MW: 61836.9 Da PI: 5.6936

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s704941g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	322	369	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PDK_30s704941g001 322 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 369 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.86E-11	316	373	No hit	No description
SuperFamily	SSF47459	1.1E-16	316	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	318	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.535	318	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	322	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-11	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MNCGPPPGQL PPCFLNLNWE QSMDPTSHFE SALSSIVSSP SSNSLATAEG LAVNNLVGRL 60 GSVYNSGEIS PQSHYMTTPL NSPPKLNLSM MGRIGPHQPA VGSLPFSANP IPITHLDQFS 120 ADPGFAERAA RFSCFDGRNY GGFAGQFGLP EAGKLSRASS GQSLKAAGPQ TGLPERGKAT 180 QTQERMQLEA KDAEFGNARE ESSVSDPVSA SGEVSLRSSG ENNPRKRKAA PKGKAKDTAS 240 PNSAMDPPKA AEEEDSNAKR SRSAEDDGTE KGSIKPKVEQ NGSGSASDDG GQKQGKEDNV 300 KPSEPSKDYI HVRARRGQAT DSHSLAERVR REKISQRMKL LQDLVPGCNK VTGKAVMLDE 360 IINYVQSLQR QVEFLSMKLA TVNPRLDFNN EANLLPKDGA PFHCVVTNAL ETECMSPLDS 420 TLYQNLGNRQ PFVNGFGDAS SQLGTFWEDD LQNVVPVDLG QNQEIAISSQ CFHVEGLSRL 480 ETSWGADISN TTFSVSYCGR STLAFRYGYE IQDIALIHLK YVFMDKLAQY LKTSSLWIIS 540 FSANCTMGPS FSDDPLGHVQ SKDLACLVTE NN

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MNCGPPPGQL PPCFLNLNWE QSMDPTSHFE SALSSIVSSP SSNSLATAEG LAVNNLVGRL  60
GSVYNSGEIS PQSHYMTTPL NSPPKLNLSM MGRIGPHQPA VGSLPFSANP IPITHLDQFS  120
ADPGFAERAA RFSCFDGRNY GGFAGQFGLP EAGKLSRASS GQSLKAAGPQ TGLPERGKAT  180
QTQERMQLEA KDAEFGNARE ESSVSDPVSA SGEVSLRSSG ENNPRKRKAA PKGKAKDTAS  240
PNSAMDPPKA AEEEDSNAKR SRSAEDDGTE KGSIKPKVEQ NGSGSASDDG GQKQGKEDNV  300
KPSEPSKDYI HVRARRGQAT DSHSLAERVR REKISQRMKL LQDLVPGCNK VTGKAVMLDE  360
IINYVQSLQR QVEFLSMKLA TVNPRLDFNN EANLLPKDGA PFHCVVTNAL ETECMSPLDS  420
TLYQNLGNRQ PFVNGFGDAS SQLGTFWEDD LQNVVPVDLG QNQEIAISSQ CFHVEGLSRL  480
ETSWGADISN TTFSVSYCGR STLAFRYGYE IQDIALIHLK YVFMDKLAQY LKTSSLWIIS  540
FSANCTMGPS FSDDPLGHVQ SKDLACLVTE NN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792945.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A2H3Y3N0	0.0	A0A2H3Y3N0_PHODC; transcription factor bHLH62-like
STRING	XP_008792945.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-64	bHLH family protein