PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s702691g023
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 286aa    MW: 32977.9 Da    PI: 6.8478
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s702691g023genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.13.3e-22200249151
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        k+r+ W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQ
  PDK_30s702691g023 200 KARVIWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQ 249
                        68*******************.9**************************** PP
2Response_reg82.21.7e-27191271109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+++  +++ale+l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + +
  PDK_30s702691g023  19 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARDALEMLRERKdhFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSIDGETSRVMKGV 108
                        89*********************.***************777777**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ ++el++
  PDK_30s702691g023 109 QHGACDYLLKPVRMKELRN 127
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.4E-1361250IPR017053Response regulator B-type, plant
SuperFamilySSF521724.84E-3616140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-4516160No hitNo description
SMARTSM004483.8E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.34718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.0E-2519128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.15E-2920132No hitNo description
SuperFamilySSF466893.67E-15197255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-23199250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-20200253IPR006447Myb domain, plants
PfamPF002494.0E-6205249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MANPSASTRT EAFPVGLRVL VVDDDPTWLK ILEKMLRKCS YEVTTCGLAR DALEMLRERK  60
DHFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSIDGE TSRVMKGVQH GACDYLLKPV  120
RMKELRNIWQ HVYRKKMHEV KEIEGHYINE NIQIMKNGSD DFEDRHLFSG ADINYVRKRK  180
DGDNQEHSDQ EFSDPATVKK ARVIWSVDLH QKFVNAVNQI GFDKVGPKKI LDLMNVPGLT  240
RENVASHLQV TSLSQSHSYL LTFHVFRHSF LTAFPVEQRQ KLLSIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-15199249454ARR10-B
3t6k_A3e-14191367119Response regulator receiver
3t6k_B3e-14191367119Response regulator receiver
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797265.10.0two-component response regulator ORR26-like isoform X1
SwissprotQ5N6V81e-140ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2H3YDP80.0A0A2H3YDP8_PHODC; Two-component response regulator
STRINGXP_008797265.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-115response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]