PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s700962g004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 797aa    MW: 91981.5 Da    PI: 8.8836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s700962g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.7e-1520109199
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        ffkvl     ++++ l++p  f++ + +    ++k  tl ++ g+ W+v++   ++++++ +++GW eF++a++Lk g f+vF+++++++f 
  PDK_30s700962g004  20 FFKVL--MPGFEKK-LRIPPAFVKYItN---LRDKRATLISPLGKLWSVNI--HGCKEKMCFREGWPEFAQAHDLKLGCFMVFRYEDDRTF- 102
                        78888..4466665.9*******55542...356789**************..*******************************9887777. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                          ++vf++
  PDK_30s700962g004 103 -SFQVFDT 109
                        .9999986 PP

2B361.41.5e-19181271597
                        -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                 B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                         ++ ++l+++ +++p +f e+ ++ + +  +++l+d +grsW v ++ r+k+ + +l+kGW++F+  n+L egD ++F+l ++ ++  ++v+
  PDK_30s700962g004 181 IISDYNLNRNYMSIPASFKESSDIMT-K-DEVILKDGEGRSWHVSICKRGKK-GAFLAKGWRDFCVGNRLGEGDKCIFELASNeKDNIMLVR 269
                        5678999***********98886553.3.49***************644444.5789***********************998787777777 PP

                        EE CS
                 B3  96 vf 97 
                        ++
  PDK_30s700962g004 270 IL 271
                        76 PP

3B364.81.4e-202933771198
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        l++  +++p +f +++++ ++   +++l+d +grsW v+++ +k+++++ l++GW+eF+ +++L+ gD ++F+l++ ++ +l+v++f+
  PDK_30s700962g004 293 LTKPYMSIPASFRASNDIATKH--QVILKDVEGRSWHVRVC-NKGKRGVHLAEGWQEFCADHRLERGDKCIFELVSMEDNTLLVQIFK 377
                        556679******9999877444..7***************4.666666999************************99*********97 PP

4B366.83.1e-21406494299
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +k   + d+  s+++++pkkf+++++  +e s+ + l+ +sg+ W+v+l   k  + ++l++GW++Fv+a+ +ke D +vFk++g+s+f  +
  PDK_30s700962g004 406 LK---TMDSDFSQQMIIPKKFVKNFK--EELSQNILLRGPSGNLWRVRL--LKDAEDMILKNGWEQFVDAHSIKEDDHLVFKYNGDSCF--N 488
                        44...457777888********7776..56999****************..9*************************************..9 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v +f++
  PDK_30s700962g004 489 VLIFDQ 494
                        999986 PP

5B358.81e-18674769198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                        f+k++++  v+ + r+++pk+fa++h g ++  +t++   ++g ++W+v++  + +++   + + W++F+++ngL+egD+++F+l++  ++ 
  PDK_30s700962g004 674 FKKAMLRDAVSDRFRMYIPKHFAAKHLGHEQ--QTIVCSLPNGkETWNVNY--KVYDEFSQFCGQWQKFAQDNGLEEGDVCIFELTRAhKDL 761
                        899999********************65643..4777777777689*****..888888778889*********************998*** PP

                        ..EEEEE- CS
                 B3  91 elvvkvfr 98 
                         + v++fr
  PDK_30s700962g004 762 AMDVHIFR 769
                        99999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-2116112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-2016112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.29417110IPR003340B3 DNA binding domain
CDDcd100179.66E-1718108No hitNo description
PfamPF023623.2E-1220109IPR003340B3 DNA binding domain
SMARTSM010191.6E-1620110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-22173274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-20173271IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-15176272No hitNo description
PROSITE profilePS5086315.368177274IPR003340B3 DNA binding domain
SMARTSM010191.6E-12178271IPR003340B3 DNA binding domain
PfamPF023622.5E-17182271IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-21280378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-19282377IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.227283379IPR003340B3 DNA binding domain
CDDcd100171.17E-15284377No hitNo description
SMARTSM010191.3E-11284379IPR003340B3 DNA binding domain
PfamPF023621.7E-18293378IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-25399497IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-25401497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.933402495IPR003340B3 DNA binding domain
CDDcd100172.30E-21404493No hitNo description
PfamPF023623.3E-19405494IPR003340B3 DNA binding domain
SMARTSM010194.7E-20405495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-23666769IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-23667769IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-22672769No hitNo description
PROSITE profilePS5086312.858674771IPR003340B3 DNA binding domain
PfamPF023624.1E-16674769IPR003340B3 DNA binding domain
SMARTSM010192.8E-13674771IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MGSCTEMLRE RDGGLQKPGF FKVLMPGFEK KLRIPPAFVK YITNLRDKRA TLISPLGKLW  60
SVNIHGCKEK MCFREGWPEF AQAHDLKLGC FMVFRYEDDR TFSFQVFDTS ACRKDYSPVG  120
VQSVARMDIR QDLNSEDASE DTSQGPMTQG SRKQIRMMDE GRPLTERTFS SCSGRKSFVA  180
IISDYNLNRN YMSIPASFKE SSDIMTKDEV ILKDGEGRSW HVSICKRGKK GAFLAKGWRD  240
FCVGNRLGEG DKCIFELASN EKDNIMLVRI LKDSCNRLNE EKSFEVIVKD FNLTKPYMSI  300
PASFRASNDI ATKHQVILKD VEGRSWHVRV CNKGKRGVHL AEGWQEFCAD HRLERGDKCI  360
FELVSMEDNT LLVQIFKQMT QSCSRGMNQE EHSFSDHLDA TRIHFLKTMD SDFSQQMIIP  420
KKFVKNFKEE LSQNILLRGP SGNLWRVRLL KDAEDMILKN GWEQFVDAHS IKEDDHLVFK  480
YNGDSCFNVL IFDQTGCEKE ACYFVKDPKD KELPVTSRRR LVTEKVASYL VNDPQHKACE  540
LYQFGRANME YSLKIFPETF PLEGYDFCSS KRLQDDKQPV PHLLATRKSL QVNVKIADNT  600
LSIKSAHSKI RNKGEKLSSN SVCAKEQTIR CKKVMNHCIE QELQLTSAMR LVTKEKKAQA  660
WQKADAIQPT NPFFKKAMLR DAVSDRFRMY IPKHFAAKHL GHEQQTIVCS LPNGKETWNV  720
NYKVYDEFSQ FCGQWQKFAQ DNGLEEGDVC IFELTRAHKD LAMDVHIFRV LDKNTPLHRG  780
RRRLPMKREG SFLRIDG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661919.10.0B3 domain-containing protein REM10-like
TrEMBLA0A3Q0I5350.0A0A3Q0I535_PHODC; B3 domain-containing protein REM10-like
STRINGXP_008794890.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5078422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-38B3 family protein