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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s700962g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | B3 | ||||||||
Protein Properties | Length: 797aa MW: 91981.5 Da PI: 8.8836 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 8.7e-15 | 20 | 109 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkvl ++++ l++p f++ + + ++k tl ++ g+ W+v++ ++++++ +++GW eF++a++Lk g f+vF+++++++f PDK_30s700962g004 20 FFKVL--MPGFEKK-LRIPPAFVKYItN---LRDKRATLISPLGKLWSVNI--HGCKEKMCFREGWPEFAQAHDLKLGCFMVFRYEDDRTF- 102 78888..4466665.9*******55542...356789**************..*******************************9887777. PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++vf++ PDK_30s700962g004 103 -SFQVFDT 109 .9999986 PP | |||||||
2 | B3 | 61.4 | 1.5e-19 | 181 | 271 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 ++ ++l+++ +++p +f e+ ++ + + +++l+d +grsW v ++ r+k+ + +l+kGW++F+ n+L egD ++F+l ++ ++ ++v+ PDK_30s700962g004 181 IISDYNLNRNYMSIPASFKESSDIMT-K-DEVILKDGEGRSWHVSICKRGKK-GAFLAKGWRDFCVGNRLGEGDKCIFELASNeKDNIMLVR 269 5678999***********98886553.3.49***************644444.5789***********************998787777777 PP EE CS B3 96 vf 97 ++ PDK_30s700962g004 270 IL 271 76 PP | |||||||
3 | B3 | 64.8 | 1.4e-20 | 293 | 377 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l++ +++p +f +++++ ++ +++l+d +grsW v+++ +k+++++ l++GW+eF+ +++L+ gD ++F+l++ ++ +l+v++f+ PDK_30s700962g004 293 LTKPYMSIPASFRASNDIATKH--QVILKDVEGRSWHVRVC-NKGKRGVHLAEGWQEFCADHRLERGDKCIFELVSMEDNTLLVQIFK 377 556679******9999877444..7***************4.666666999************************99*********97 PP | |||||||
4 | B3 | 66.8 | 3.1e-21 | 406 | 494 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k + d+ s+++++pkkf+++++ +e s+ + l+ +sg+ W+v+l k + ++l++GW++Fv+a+ +ke D +vFk++g+s+f + PDK_30s700962g004 406 LK---TMDSDFSQQMIIPKKFVKNFK--EELSQNILLRGPSGNLWRVRL--LKDAEDMILKNGWEQFVDAHSIKEDDHLVFKYNGDSCF--N 488 44...457777888********7776..56999****************..9*************************************..9 PP EEEE-S CS B3 94 vkvfrk 99 v +f++ PDK_30s700962g004 489 VLIFDQ 494 999986 PP | |||||||
5 | B3 | 58.8 | 1e-18 | 674 | 769 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f+k++++ v+ + r+++pk+fa++h g ++ +t++ ++g ++W+v++ + +++ + + W++F+++ngL+egD+++F+l++ ++ PDK_30s700962g004 674 FKKAMLRDAVSDRFRMYIPKHFAAKHLGHEQ--QTIVCSLPNGkETWNVNY--KVYDEFSQFCGQWQKFAQDNGLEEGDVCIFELTRAhKDL 761 899999********************65643..4777777777689*****..888888778889*********************998*** PP ..EEEEE- CS B3 91 elvvkvfr 98 + v++fr PDK_30s700962g004 762 AMDVHIFR 769 99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.44E-21 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-20 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.294 | 17 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.66E-17 | 18 | 108 | No hit | No description |
Pfam | PF02362 | 3.2E-12 | 20 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-16 | 20 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-22 | 173 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-20 | 173 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-15 | 176 | 272 | No hit | No description |
PROSITE profile | PS50863 | 15.368 | 177 | 274 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-12 | 178 | 271 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-17 | 182 | 271 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-21 | 280 | 378 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-19 | 282 | 377 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.227 | 283 | 379 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.17E-15 | 284 | 377 | No hit | No description |
SMART | SM01019 | 1.3E-11 | 284 | 379 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-18 | 293 | 378 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.49E-25 | 399 | 497 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-25 | 401 | 497 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.933 | 402 | 495 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.30E-21 | 404 | 493 | No hit | No description |
Pfam | PF02362 | 3.3E-19 | 405 | 494 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-20 | 405 | 495 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-23 | 666 | 769 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-23 | 667 | 769 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.56E-22 | 672 | 769 | No hit | No description |
PROSITE profile | PS50863 | 12.858 | 674 | 771 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-16 | 674 | 769 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-13 | 674 | 771 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MGSCTEMLRE RDGGLQKPGF FKVLMPGFEK KLRIPPAFVK YITNLRDKRA TLISPLGKLW 60 SVNIHGCKEK MCFREGWPEF AQAHDLKLGC FMVFRYEDDR TFSFQVFDTS ACRKDYSPVG 120 VQSVARMDIR QDLNSEDASE DTSQGPMTQG SRKQIRMMDE GRPLTERTFS SCSGRKSFVA 180 IISDYNLNRN YMSIPASFKE SSDIMTKDEV ILKDGEGRSW HVSICKRGKK GAFLAKGWRD 240 FCVGNRLGEG DKCIFELASN EKDNIMLVRI LKDSCNRLNE EKSFEVIVKD FNLTKPYMSI 300 PASFRASNDI ATKHQVILKD VEGRSWHVRV CNKGKRGVHL AEGWQEFCAD HRLERGDKCI 360 FELVSMEDNT LLVQIFKQMT QSCSRGMNQE EHSFSDHLDA TRIHFLKTMD SDFSQQMIIP 420 KKFVKNFKEE LSQNILLRGP SGNLWRVRLL KDAEDMILKN GWEQFVDAHS IKEDDHLVFK 480 YNGDSCFNVL IFDQTGCEKE ACYFVKDPKD KELPVTSRRR LVTEKVASYL VNDPQHKACE 540 LYQFGRANME YSLKIFPETF PLEGYDFCSS KRLQDDKQPV PHLLATRKSL QVNVKIADNT 600 LSIKSAHSKI RNKGEKLSSN SVCAKEQTIR CKKVMNHCIE QELQLTSAMR LVTKEKKAQA 660 WQKADAIQPT NPFFKKAMLR DAVSDRFRMY IPKHFAAKHL GHEQQTIVCS LPNGKETWNV 720 NYKVYDEFSQ FCGQWQKFAQ DNGLEEGDVC IFELTRAHKD LAMDVHIFRV LDKNTPLHRG 780 RRRLPMKREG SFLRIDG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661919.1 | 0.0 | B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A3Q0I535 | 0.0 | A0A3Q0I535_PHODC; B3 domain-containing protein REM10-like | ||||
STRING | XP_008794890.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50784 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 6e-38 | B3 family protein |