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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s700322g007 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
NAC |
| Protein Properties |
Length: 140aa MW: 16480.9 Da PI: 10.1983 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s700322g007 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 152.7 | 1.7e-47 | 5 | 122 | 11 | 129 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
+ee++++yL +kv + ++++ +++ evd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg+r nrat+ gyWkatgkdke+++ kg lvg+
PDK_30s700322g007 5 NEEIITHYLSAKVMNPSFSA-RAMGEVDLNKCEPWDLPSKAKMGEKEWYFFCQKDRKYPTGTRINRATEYGYWKATGKDKEIYRGKGILVGM 95
69****************99.89***************99999************************************************* PP
NAM 103 kktLvfykgrapkgektdWvmheyrle 129
kktLvfy+grapkgekt+Wv+he+rle
PDK_30s700322g007 96 KKTLVFYRGRAPKGEKTNWVIHEFRLE 122
************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 140 aa
Download sequence Send
to blast |
MGVYNEEIIT HYLSAKVMNP SFSARAMGEV DLNKCEPWDL PSKAKMGEKE WYFFCQKDRK 60
YPTGTRINRA TEYGYWKATG KDKEIYRGKG ILVGMKKTLV FYRGRAPKGE KTNWVIHEFR 120
LEGRTQYHNH HRTPRVPSFP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 3swm_B | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 3swm_C | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 3swm_D | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 3swp_A | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 3swp_B | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 3swp_C | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 3swp_D | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
| 4dul_A | 5e-41 | 5 | 121 | 27 | 142 | NAC domain-containing protein 19 |
| 4dul_B | 5e-41 | 5 | 121 | 27 | 142 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
