PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s699271g013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 164aa MW: 18489.8 Da PI: 10.433 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PDK_30s699271g013 29 YECKTCNRRFPTFQALGGHRTSH 51 99**********99998888877 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0011 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H PDK_30s699271g013 74 HECPVCGLEFPIGQALGGHMRRH 96 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.57E-9 | 27 | 96 | No hit | No description |
Pfam | PF13912 | 2.0E-12 | 28 | 53 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.096 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-10 | 73 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 74 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGDLLLLLSC NGAKAQKMNG IEKPMGRVYE CKTCNRRFPT FQALGGHRTS HLRPRIRRNR 60 VEPPKKERPK QRVHECPVCG LEFPIGQALG GHMRRHKPTE AGEVHAEEKA GRKLWPLPIG 120 RCSLELIAII FAGVIYLDFF CFSCLSKSSS RFELVIAPKP LNIS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008795823.1 | 2e-76 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2H3YAC2 | 5e-75 | A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like | ||||
STRING | XP_008795823.1 | 9e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-25 | C2H2 family protein |