PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s696511g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 199aa    MW: 21678.3 Da    PI: 6.1572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s696511g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-1859111156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                        + y+GVr++++ g+Wv+e+r+p     +   r +lg+f t+e+Aa+a++ a+ +l+ge
  PDK_30s696511g002  59 PVYRGVRRRSNGGKWVCEVREP-----HskSRLWLGSFATPEMAARAHDVAAIALHGE 111
                        68****************9996.....335**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1259111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2960120IPR001471AP2/ERF domain
PROSITE profilePS5103221.66760118IPR001471AP2/ERF domain
SMARTSM003806.3E-3260124IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2060120IPR016177DNA-binding domain
CDDcd000184.44E-2761120No hitNo description
PRINTSPR003671.4E-56172IPR001471AP2/ERF domain
PRINTSPR003671.4E-584100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDLEDDSSVS SSSNDLSPRH PDVPIPPPYS PTSTPAPSPS STMLKRRAGR KKFKETRHPV  60
YRGVRRRSNG GKWVCEVREP HSKSRLWLGS FATPEMAARA HDVAAIALHG ESAKLNFPDS  120
THALPRASTT SPDDIRCAAK EEKAADAASE VFVDEEALFN MPGLVDSMAE GLLLTPPAMQ  180
KGFDWDGAEC HVDLSLWGD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777348.21e-116dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI46e-57DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z56e-57DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A2H3X2K21e-115A0A2H3X2K2_PHODC; dehydration-responsive element-binding protein 1F-like
STRINGXP_008777348.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.15e-47C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]