PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s695271g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 352aa    MW: 40576.3 Da    PI: 10.1403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s695271g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.39.9e-562113382129
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        ppGfrFhPtdeel+++yL kkv +++++  ++i+e+d++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++
  PDK_30s695271g003 211 PPGFRFHPTDEELITYYLLKKVLDSSFTG-RAIAEIDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATDAGYWKATGKDREIY 301
                        9*************************999.89***************99999**************************************** PP

                NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        s+ +++lvg+kktLvfykgrapkg+k++Wvmheyrle
  PDK_30s695271g003 302 SSrTHSLVGMKKTLVFYKGRAPKGQKSNWVMHEYRLE 338
                        9856677****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-59205345IPR003441NAC domain
PROSITE profilePS5100555.552210352IPR003441NAC domain
PfamPF023651.4E-28211337IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010160Biological Processformation of organ boundary
GO:0010223Biological Processsecondary shoot formation
GO:0048366Biological Processleaf development
GO:0048504Biological Processregulation of timing of organ formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAVRLRQHED YSFVRIIHKD LRICLKILTG IMANAKSRGM GSVNRDYHDR LVTAGGRCTL  60
GLTAIRAELQ TTWESISYAR SVLGADSLCL EENFSMVIDW IRRVDWYRDD HLLLHETRRL  120
AERSYNALTI VGSRAGSAQV EARPPRVRLS RHAQPFENTG GFGGGTPWRI IGKNEYPNPP  180
RGALGVLSVF FNRVSMERYG HHFDSSEAHF PPGFRFHPTD EELITYYLLK KVLDSSFTGR  240
AIAEIDLNKC EPWELPEKAK MGEKEWYFFS LRDRKYPTGL RTNRATDAGY WKATGKDREI  300
YSSRTHSLVG MKKTLVFYKG RAPKGQKSNW VMHEYRLEGK FAYHFLSRSS KI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4920633713142NO APICAL MERISTEM PROTEIN
1ut4_B2e-4920633713142NO APICAL MERISTEM PROTEIN
1ut7_A2e-4920633713142NO APICAL MERISTEM PROTEIN
1ut7_B2e-4920633713142NO APICAL MERISTEM PROTEIN
3swm_A2e-4920633716145NAC domain-containing protein 19
3swm_B2e-4920633716145NAC domain-containing protein 19
3swm_C2e-4920633716145NAC domain-containing protein 19
3swm_D2e-4920633716145NAC domain-containing protein 19
3swp_A2e-4920633716145NAC domain-containing protein 19
3swp_B2e-4920633716145NAC domain-containing protein 19
3swp_C2e-4920633716145NAC domain-containing protein 19
3swp_D2e-4920633716145NAC domain-containing protein 19
4dul_A2e-4920633713142NAC domain-containing protein 19
4dul_B2e-4920633713142NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00562DAPTransfer from AT5G53950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6222701e-111HM622270.1 Elaeis guineensis no apical meristem-related protein (NAM1) gene, complete cds.
GenBankHM6222721e-111HM622272.1 Phoenix dactylifera no apical meristem-related protein (NAM1) gene, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99403543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-90NAC family protein