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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s692531g009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GRAS | ||||||||
Protein Properties | Length: 215aa MW: 25267 Da PI: 9.8009 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 161 | 1e-49 | 38 | 211 | 201 | 374 |
GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 + V+++ + +l+de+v ++s+r++vL+++++++P+v+++ + +++++ F++rf eal +ysalfd+le+++pre+e+r +Er l+gr PDK_30s692531g009 38 EVFVKSISKKRNLVDETVIVDSPRNKVLNTIRKMNPDVFIHGVVNGSYSAPFFVTRFREALFHYSALFDMLETNVPREDEQRLLIERDLFGR 129 5789999999********************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ nv+aceg+er+er et+++W+ r +aGF+++pl+ +++k+ak ++ ++ + + ++e+s +l++gWk+r ++++SaW+ PDK_30s692531g009 130 DALNVIACEGSERVERPETYKQWQVRNLRAGFTQLPLNPEIMKKAKDKVKIHYHKDFIIDEDSRWLLQGWKGRIIYALSAWK 211 *****************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.395 | 1 | 191 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-47 | 38 | 211 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLASLDPDEY GPQSTARKHE TARLKEKMRR KKEEPLGEVF VKSISKKRNL VDETVIVDSP 60 RNKVLNTIRK MNPDVFIHGV VNGSYSAPFF VTRFREALFH YSALFDMLET NVPREDEQRL 120 LIERDLFGRD ALNVIACEGS ERVERPETYK QWQVRNLRAG FTQLPLNPEI MKKAKDKVKI 180 HYHKDFIIDE DSRWLLQGWK GRIIYALSAW KPYET |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784606.1 | 1e-119 | scarecrow-like protein 9 | ||||
Refseq | XP_008784607.1 | 1e-119 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 5e-79 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2H3XJ75 | 1e-118 | A0A2H3XJ75_PHODC; scarecrow-like protein 9 | ||||
STRING | XP_008784606.1 | 1e-119 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22289 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 4e-81 | GRAS family protein |