PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s689731g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 74aa    MW: 8477.36 Da    PI: 5.8775
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s689731g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66.1e-081559345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       +WT    +l+ +a +++      +W ++a+ +g  ++ +++k ++ 
  PDK_30s689731g005 15 SWTSRQNKLFEEALARYDEAtpdRWQKVAEAVG-DKSTEEVKRHYE 59
                       7*****************88*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.7611166IPR017884SANT domain
SMARTSM007174.2E-71264IPR001005SANT/Myb domain
PfamPF002492.8E-61559IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-121569IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-51568IPR009057Homeodomain-like
CDDcd001677.93E-42262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MASSSMSSSR TSESSWTSRQ NKLFEEALAR YDEATPDRWQ KVAEAVGDKS TEEVKRHYEL  60
LIKDINRIES GRVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23674169RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026666198.11e-47protein RADIALIS-like 4
SwissprotF4JVB83e-27RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A3Q0IGS63e-46A0A3Q0IGS6_PHODC; protein RADIALIS-like 4
STRINGXP_008810723.14e-47(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-26RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]