PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s689731g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 51aa MW: 5711.32 Da PI: 9.189

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s689731g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.9e-07	15	47	3	32
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg 32 +WT E +++ +a +++ ++ +W+++a+ +g PDK_30s689731g004 15 SWTLRENKRFEEALAKYDKDtpdRWHKVAQAVG 47 7*****************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.08E-8	9	48	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 51 aa Download sequence Send to blast
MASSSLSLPR TSDSSWTLRE NKRFEEALAK YDKDTPDRWH KVAQAVGSGS I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026666196.1	4e-29	protein RADIALIS-like 4
TrEMBL	A0A3Q0IGV5	9e-28	A0A3Q0IGV5_PHODC; protein RADIALIS-like 4
STRING	XP_008810724.1	2e-28	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	3e-14	RAD-like 6