PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s688311g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HB-other | ||||||||
Protein Properties | Length: 147aa MW: 16597.5 Da PI: 4.7188 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.9 | 2.2e-10 | 71 | 117 | 2 | 48 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWF 48 kR ++++e + +Lee+F++n++++ +e++eL +kl+L rqV +++ PDK_30s688311g005 71 PKRLRLSPEKTWVLEEAFNRNPTLDSTEKAELCAKLNLLPRQVENYY 117 6899***************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-10 | 62 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.568 | 67 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-9 | 68 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.003 | 69 | 126 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-7 | 71 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.63E-9 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MANLGKGPST PNLTTTFLGS SSPSRSVQRE GTSSQNMRDI DINLPPPEAE EEIPIGGMDD 60 TVQEENNIPK PKRLRLSPEK TWVLEEAFNR NPTLDSTEKA ELCAKLNLLP RQVENYYYWG 120 HFCKDMMMDA ARNPRSDSHR ETIGFAE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905884.1 | 5e-25 | homeobox-leucine zipper protein HOX3-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 1e-08 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |