PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s686362g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 408aa MW: 45025.2 Da PI: 9.5518 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PDK_30s686362g003 90 FICEICHKGFQRDQNLQLHRRGH 112 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H r + PDK_30s686362g003 166 WKCDKCSKKYAVQSDWKAHSRIC 188 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.74E-6 | 89 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 89 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.056 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 200 | 131 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 154 | 187 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.74E-6 | 161 | 186 | No hit | No description |
SMART | SM00355 | 130 | 166 | 186 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MSNITGDGES FSSGINTGED DEVHQHHEQQ QLHHHLFDGP EAAGANSDVS TSRLPPPPAV 60 KKKRNLPGTP DPAAEVIALS PKTLMATNRF ICEICHKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTSTVIQKKV YICPEPACVH HNPSRALGDL TGIKKHYCRK HGEKKWKCDK CSKKYAVQSD 180 WKAHSRICGT REYKCDCGTI FSRRDSFITH RAFCDALAQD NSKLNQPLMA AMASSLQGQA 240 PKLKMVVDTD ATSIGLSEFR LGDMKSPPFS QQPLDMAETP RTIPSSSLQF SESGPMGFDG 300 HRDVNMARMV AGAAHMSATA LLQKAAQMGA TTSGNNIMYR GFTSVMAGPD RVSSTNPYGP 360 MKAHGPFDHL TPPGEQSQLA GINRGGTPNR FYTELRNLLI INKLFRIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-33 | 162 | 225 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 3e-33 | 162 | 225 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789952.1 | 0.0 | protein indeterminate-domain 2-like | ||||
TrEMBL | A0A2H3XX14 | 0.0 | A0A2H3XX14_PHODC; protein indeterminate-domain 2-like | ||||
STRING | XP_008789952.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-101 | C2H2 family protein |