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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s674671g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 261aa MW: 30432.9 Da PI: 4.4758 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.5e-19 | 38 | 91 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++++LA+ lgL+ rqV +WFqNrRa++k PDK_30s674671g001 38 KKRRLTADQVQFLESSFELENKLEPERKAQLARDLGLQPRQVAIWFQNRRARWK 91 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.4 | 1.7e-42 | 37 | 127 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE+sFe e+kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdyeaLk++yd lk++ ++L +e+e+L++e+ PDK_30s674671g001 37 EKKRRLTADQVQFLESSFELENKLEPERKAQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALKSSYDVLKADYDNLLDEKEKLQAEV 127 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-19 | 32 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-19 | 36 | 97 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-17 | 38 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.75E-16 | 38 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 39 | 100 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-6 | 64 | 73 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-6 | 73 | 89 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-17 | 93 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MNFEDVHGQR PEWSFCRPFE LEETGDEDLD EGVYRPEKKR RLTADQVQFL ESSFELENKL 60 EPERKAQLAR DLGLQPRQVA IWFQNRRARW KTKQLEKDYE ALKSSYDVLK ADYDNLLDEK 120 EKLQAEVLSL TNKVFLKEKD IGSSAPFECN KLPPHELQNI VPDAMREVKR VDARVTVCKQ 180 EDLSSANSTV LDSGSPPYID EVDRSTLMEP VDSFHAFEPD RSDLSHAGEV DEVKGSGFLR 240 LEDNLNNYRF PVEDQPYWFW P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 93 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661502.1 | 0.0 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A3Q0I7X6 | 0.0 | A0A3Q0I7X6_PHODC; homeobox-leucine zipper protein HAT5-like | ||||
STRING | XP_008793499.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16055 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-45 | homeobox 1 |