PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s673181g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 574aa    MW: 64403.1 Da    PI: 6.2901
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s673181g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.73.9e-1302055732373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++ L++cAea+s+++ ++ + l+++ +  +s  g+p+qRl ay++e+L ar  +s++++y+al++++ +   s+e l++++++++++P++kf
  PDK_30s673181g001 205 KQMLIRCAEALSEDKINEFEMLVQEARASVSIIGEPIQRLGAYMLEGLVARKESSGTNIYRALRCQKPA---SKELLSYMRILYDICPYFKF 293
                        689*****************************************************************9...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++++aN aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg++++es+  + + l+ +g+ L+++ +++++p+efn l  
  PDK_30s673181g001 294 GYMAANGAIAEALRHEDRIHIIDFQIAQGTQWVTLIQALAARPGGPPHVRITGIDDAESEyaRGDGLQLVGKMLSDMSKKFNIPLEFNGL-P 384
                        ********************************************************9999999**************************6.7 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                            d++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+++n+++Fl rfle+l+yy a+f+s++++l
  PDK_30s673181g001 385 VFGPDVTREMLDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESNTNTTPFLMRFLETLDYYYAMFESIDVTL 476
                        78899*************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pr+s++ri+vE+++l+++ivn++aceg+er+erhe l+kWr+rl++aGFkp+pls+++++ +k+ll  ++ d y++ e++g+++lgWkdr+L
  PDK_30s673181g001 477 PRDSKQRINVEQHCLAKDIVNIIACEGKERVERHELLGKWRSRLTMAGFKPLPLSSYVNSVIKSLLGCYS-DKYTLVEKDGAMLLGWKDRNL 567
                        ******************************************************************9999.55******************* PP

               GRAS 368 vsvSaW 373
                        +s+SaW
  PDK_30s673181g001 568 ISASAW 573
                        ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.924178555IPR005202Transcription factor GRAS
PfamPF035141.3E-127205573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDSHQLFRCE LTGADASRKF PSPRTLAYSE RASGSIKLGL GNSPNSPLSS QFDCDTLSIL  60
SNSQEQYSST ETISGVSPSQ YSPLEINSSS EQTHIHPAES IQVPSNSSYA VSNQCMRRAL  120
QKIESVLMAP DTDEATTSTN VESDENKQPQ LTKQRSRTWS HESRMEPPAV IQPQYTSGRF  180
PKASHEVHPE KRLREMKEFP ESDVKQMLIR CAEALSEDKI NEFEMLVQEA RASVSIIGEP  240
IQRLGAYMLE GLVARKESSG TNIYRALRCQ KPASKELLSY MRILYDICPY FKFGYMAANG  300
AIAEALRHED RIHIIDFQIA QGTQWVTLIQ ALAARPGGPP HVRITGIDDA ESEYARGDGL  360
QLVGKMLSDM SKKFNIPLEF NGLPVFGPDV TREMLDIRPG EALAVNFTLQ LHHTPDESVD  420
VNNPRDGLLR MVKGLSPKVT TLVEQESNTN TTPFLMRFLE TLDYYYAMFE SIDVTLPRDS  480
KQRINVEQHC LAKDIVNIIA CEGKERVERH ELLGKWRSRL TMAGFKPLPL SSYVNSVIKS  540
LLGCYSDKYT LVEKDGAMLL GWKDRNLISA SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6921057325378Protein SCARECROW
5b3h_A3e-6921057324377Protein SCARECROW
5b3h_D3e-6921057324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797425.10.0chitin-inducible gibberellin-responsive protein 1-like isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2H3YEH10.0A0A2H3YEH1_PHODC; chitin-inducible gibberellin-responsive protein 1-like isoform X1
STRINGXP_008797425.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]