PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Publication

Basic Information? help Back to Top

TF ID

PDK_30s672421g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 196aa MW: 22310.9 Da PI: 8.5796

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s672421g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98	9.4e-31	68	169	4	96
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilklqqq 86 aCk+lr++C++ C++ pyfp ++p+kfa+vh++FGa+n +k+lk p+e eda+ s+vyeA+ar+rdPvyG+v+ i + q q PDK_30s672421g001 68 ACKLLRKRCSEACIFIPYFPPTEPEKFAAVHRVFGARNASKMLKVFPTEPSyadipanfrEDAVISMVYEANARLRDPVYGCVASIAAFQIQ 159 9*****************************************9977665566677776**************************** PP DUF260 87 leqlkaelal 96 +ql+ el PDK_30s672421g001 160 NSQLQRELTN 169 ***99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.165	64	174	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-31	68	169	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGQIVIGCGQ IHEREDVLDH IQIKPEVIAF FPLEHKYLCF YVRVVPRRAI KLNNHKNLYI 60 LFVNSYIACK LLRKRCSEAC IFIPYFPPTE PEKFAAVHRV FGARNASKML KVFPTEPSYA 120 DIPANFREDA VISMVYEANA RLRDPVYGCV ASIAAFQIQN SQLQRELTNA LAENIALKSQ 180 LSEAQFLLAH LSTSHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	68	173	14	110	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	68	173	14	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794215.1	2e-79	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-35	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2H3Y6Y0	5e-78	A0A2H3Y6Y0_PHODC; LOB domain-containing protein 12-like
STRING	XP_008794215.1	9e-79	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-38	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]