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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s672321g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 30442.5 Da PI: 6.1576 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2.1e-08 | 163 | 210 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+riN+++ L++l+P + k + a +L + ++Y++sLq PDK_30s672321g006 163 SHSLAERVRRERINERMRCLQDLVPGC----YKAMGMAGMLDEIINYVQSLQ 210 8*************************8....355999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.78E-10 | 157 | 214 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-16 | 157 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-16 | 159 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.79 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 163 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 165 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MAEFSENINC LKPSLPFMEM DPSLELMGQF PELNGTAVEC CYSSMGLMGF PSENYYQPEF 60 SMPLADSLSS FLPLECAKPN TASRPVTADR ERGPGDRKRK AKAAPETSST NSSEPPTESL 120 LRDDKSKKKN VWNVKRGRKN SEEVEKPKEV VHVRARRGQA TDSHSLAERV RRERINERMR 180 CLQDLVPGCY KAMGMAGMLD EIINYVQSLQ NQVEFLSMKL SAASSFYDYN LDLEATATPQ 240 VVNAYEAHDV DRVLRERYGC CTTFHSTMPL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008807118.2 | 0.0 | transcription factor bHLH75-like | ||||
TrEMBL | A0A2H3Z270 | 0.0 | A0A2H3Z270_PHODC; transcription factor bHLH75-like | ||||
STRING | XP_008807118.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15639 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 8e-39 | BR enhanced expression 1 |