PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s671651g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 245aa    MW: 26801.4 Da    PI: 4.2253
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s671651g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26033.89.3e-1114358100
             DUF260  58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                        m+s++++++ara+dPv G++++il+l++qle+ +aelal+ ++
  PDK_30s671651g002   1 MRSIIFQSNARAHDPVGGCYRIILELERQLERDSAELALVLRQ 43 
                        89***********************************998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.7E-7139IPR004883Lateral organ boundaries, LOB
PROSITE profilePS508918.824144IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRSIIFQSNA RAHDPVGGCY RIILELERQL ERDSAELALV LRQLAICRAQ AQAALSPGTA  60
DLGINPNLIL STGDDTGSDA IYGSHQSGLV LPMQQQQQQP QQQQQQYYDY FYYEGGGDNP  120
NGDHHNNNNH SISNSNGING SYNNAGVEME VATSSVLSLH PQQCRVDEEA VKPLVDMFEV  180
RQAFTIGDDD EESAKNFAAT VAEPFQCSGK IELKEELNPI EDVPEHDLKG AASLFTLTNC  240
TSSSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779803.20.0LOB domain-containing protein 7-like, partial
TrEMBLA0A2H3X8160.0A0A2H3X816_PHODC; LOB domain-containing protein 7-like
STRINGXP_008779803.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-11LOB domain-containing protein 22