![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s671651g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26801.4 Da PI: 4.2253 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 33.8 | 9.3e-11 | 1 | 43 | 58 | 100 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+s++++++ara+dPv G++++il+l++qle+ +aelal+ ++ PDK_30s671651g002 1 MRSIIFQSNARAHDPVGGCYRIILELERQLERDSAELALVLRQ 43 89***********************************998665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.7E-7 | 1 | 39 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 8.824 | 1 | 44 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MRSIIFQSNA RAHDPVGGCY RIILELERQL ERDSAELALV LRQLAICRAQ AQAALSPGTA 60 DLGINPNLIL STGDDTGSDA IYGSHQSGLV LPMQQQQQQP QQQQQQYYDY FYYEGGGDNP 120 NGDHHNNNNH SISNSNGING SYNNAGVEME VATSSVLSLH PQQCRVDEEA VKPLVDMFEV 180 RQAFTIGDDD EESAKNFAAT VAEPFQCSGK IELKEELNPI EDVPEHDLKG AASLFTLTNC 240 TSSSI |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008779803.2 | 0.0 | LOB domain-containing protein 7-like, partial | ||||
TrEMBL | A0A2H3X816 | 0.0 | A0A2H3X816_PHODC; LOB domain-containing protein 7-like | ||||
STRING | XP_008779803.1 | 1e-177 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-11 | LOB domain-containing protein 22 |