PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s670711g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Protein Properties

Length: 319aa MW: 36539.4 Da PI: 7.7752

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s670711g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.3e-18	173	261	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +++s+v++ +l lp kf++e+ + + ++ ++lede+g +++ + +++ + l++GW+ F+ +++L++gD +vF+l++ ++f PDK_30s670711g005 173 FVKSMLRSHVSSCFWLGLPSKFCKENL-P-PHEMIMVLEDENGLEYDAIY--IGNRTG--LSGGWRAFAMDHKLEDGDALVFELVKPDRF-- 256 89*******************9995.3.46689***********..555544..**********************987777.. PP EEEEE CS B3 93 vvkvf 97 +v ++ PDK_30s670711g005 257 KVYII 261 77766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.5E-22	165	262	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.89E-25	166	262	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.21E-29	171	262	No hit	No description
Pfam	PF02362	6.2E-17	173	262	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.816	173	264	IPR003340	B3 DNA binding domain
SMART	SM01019	5.6E-26	173	264	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MADDKNSYEE IRRQRIQENL KHLEMCWMNG SSEKLRDFER LEVCGVILAT EVEDLGISKI 60 SQCLLEVAKC EYKLLKCHAS PKSKKNLEMT ELRRSSRARN PVPSYRDEKL VLTDDFLGKV 120 GDIDLRSYRK RYSRSDQNGR VYTGRVVSYE EQIGAVQRAE KLQSDLNSNH PSFVKSMLRS 180 HVSSCFWLGL PSKFCKENLP PHEMIMVLED ENGLEYDAIY IGNRTGLSGG WRAFAMDHKL 240 EDGDALVFEL VKPDRFKVYI IKAIESQDSD DRIADVESKG TNISTKAEES VEDSTVSQKP 300 VSNNGSFRRA ERARKRRPG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803014.1	0.0	B3 domain-containing protein Os05g0481400
TrEMBL	A0A2H3YS65	0.0	A0A2H3YS65_PHODC; B3 domain-containing protein Os05g0481400
STRING	XP_008803014.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11370	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-56	B3 family protein