PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s668471g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 360aa    MW: 39614.9 Da    PI: 6.7029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s668471g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-08186234355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  PDK_30s668471g003 186 NSHSLAERIRRERISERMRFLQGLVPGC----NKVTGKAVMLDEIINYVQSLQ 234
                        58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16181250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15181248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.824183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5186234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSARKEVPEM VAPGYCASGA ASHWDPLLSM DQNVDFSGSA GHSSYNVRVP ESKGSSIIDS  60
MKQIPRLSSF GSESFTEMLS SFTLPIAAVP CPPDIPSGFL LLNTVKQLIN LHWSSYKDVE  120
AGQQKDISPD SVKSSMEDES KQKSELNSGA NSPNSTEKLS KKQWHHGGDV KDDHNHARAK  180
RGQSTNSHSL AERIRRERIS ERMRFLQGLV PGCNKVTGKA VMLDEIINYV QSLQKQVEFL  240
SMKLVAVNPE SDLAIKQILS KDMLHSLNRN PAIPGFGVEL NQIHPHLHWS SSCEFKQAEM  300
LLSSKPTSGD IIGATNPHIF PLGQASSVWD AELQNIFQMG LISNPPLDCE KLNGEMKVEP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798910.10.0transcription factor bHLH74-like isoform X2
SwissprotQ6NKN93e-51BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A2H3YHZ60.0A0A2H3YHZ6_PHODC; transcription factor bHLH74-like isoform X2
STRINGXP_008798908.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5090022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]