PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s668231g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 752aa    MW: 82804.1 Da    PI: 6.9178
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s668231g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.3e-28216269155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ +LH++Fv av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  PDK_30s668231g001 216 KPRVVWSVDLHRQFVAAVNQL-GVDKAVPKKILELMHVHGLTRENVASHLQKYRL 269
                        79*******************.********************************8 PP
2Response_reg73.77.1e-25321401109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+ + ++++ ++l+k  y +v++++ + +al++l+ek+  +Dl+l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + +
  PDK_30s668231g001  32 VLVVDDDLTCLKIIDRMLRKCLY-DVTVCSGAAAALAMLREKKgeFDLVLSDVYMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKDAVMKGV 121
                        89*********************.***************999999**********************6654.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp ++e+l +
  PDK_30s668231g001 122 THGACDYLIKPLSMEALKN 140
                        ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.9E-4129165No hitNo description
SuperFamilySSF521723.13E-3529154IPR011006CheY-like superfamily
SMARTSM004484.8E-3030142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.32831146IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.5E-2232140IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-2733145No hitNo description
SuperFamilySSF466892.51E-19213273IPR009057Homeodomain-like
PROSITE profilePS5129410.118213275IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-29215273IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-24216269IPR006447Myb domain, plants
PfamPF002491.2E-6218268IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MEPSRAAAST ASSGRPRNAL RPLSDFPAGL RVLVVDDDLT CLKIIDRMLR KCLYDVTVCS  60
GAAAALAMLR EKKGEFDLVL SDVYMPDMDG FKLLEHIGLE MDLPVIMMSA DDGKDAVMKG  120
VTHGACDYLI KPLSMEALKN IWQHVVRKRR NELKELEHSG SAEENDRKKR APEEGDNASS  180
GNEGSWKNVK RRRDEEGEVV VQEEVEERED HSTLKKPRVV WSVDLHRQFV AAVNQLGVDK  240
AVPKKILELM HVHGLTRENV ASHLQKYRLY MRRVSVPQHQ GRLDTPYTGS SEATFRSVDS  300
FDGFDLHSLA VSSQLSPQSL TTLHSAPRRV TNTSIGMSSV DQMGFFNSSA QISNASNIRP  360
PLMQQINKQQ MNFPSGPSTS MESRQLGQSQ QLIQSYGNMG LQASEGASVL LNLPSLLRTS  420
TSFPGGSINA NLSNSSVMQM THRGQQFSLS QQRNQIHASM PQLPQTRGLI LNGIAGEHDS  480
RLPTTIGQIL SNEVSSHISG RSGSNMNVDT SLPGGYMNAS SYGAVSHALY ADFPNSCMNE  540
STGSCYPLAR SVGATSLTST AMPPVGDVEA LGNSTGLRGA KDFVPNYDLF SELHQSKSQD  600
WKLQNINVSY PSDQHLGSKQ SNIAFGSPSL AHQDSSATVK DGSSRNTRTV RKEIFSVRTE  660
IGHEKGERIA QRNRTILVEN SVRLKSEGMS DPRYQDVLFD DNIIQNELMN VVGKKIFLSH  720
IEVLVKFQQQ EGVVQVDPEL NFDGYSLDNI PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21215275464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147169KRRNELKELEHSGSAEENDRKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813715.10.0two-component response regulator ARR1-like
TrEMBLA0A2H3ZH140.0A0A2H3ZH14_PHODC; two-component response regulator ARR1-like
STRINGXP_008813715.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2940624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-115response regulator 1