 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s667791g003 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
MYB_related |
| Protein Properties |
Length: 312aa MW: 35290.9 Da PI: 7.1651 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s667791g003 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 23.4 | 1.3e-07 | 131 | 172 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
WT+eE ++l d+++++ + + Ia +++ R+ +++ksr+++
PDK_30s667791g003 131 WTKEETDQLFDLCERFDLR-FIVIADRFPSSRSVEELKSRYYS 172
*******************.*********************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDAKDILGLP KNSFPAAQEK KPRPPKDSQR KPDGVSREVY ALTGGMAPLM PSIEVSHLKK 60
RPNSEKEKIT WQWLSFTSSA RTDNLQLYHW VRVVNGVPPT GDYSFAKYNK SVDVLRYTDE 120
EYEKHLIDPM WTKEETDQLF DLCERFDLRF IVIADRFPSS RSVEELKSRY YSVNRALLIA 180
RAPSPSDVSG HPLVKEPYNM VHEIERKRAL SAVLSQTKQQ ERRDAEILAE AKRIMESRMA 240
SKSAEDAEMP VNPTGNETEK ATAPAESVSP STNIHPSSST AAPATATTES ASTPASLRMV 300
DPIFYFYFLQ LY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 2e-21 | 102 | 187 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 2e-21 | 102 | 187 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
