PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s665281g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 282aa    MW: 32157.2 Da    PI: 7.8825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s665281g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY352.8e-11160183124
                        ---SS-EEEEEEE--TT-SS-EEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                        ldDgy+WrKYGqK vk++++pr Y
  PDK_30s665281g005 160 LDDGYKWRKYGQKFVKNTQHPRWY 183
                        59********************99 PP
2WRKY573.8e-182262642159
                        -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         rsYYrCt  +C+vkk+ver aedp++v++tYeg+H+h+
  PDK_30s665281g005 226 NRSYYRCTEDNCRVKKRVERFAEDPRMVITTYEGRHTHS 264
                        69************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-31145180IPR003657WRKY domain
SuperFamilySSF1182905.49E-11153196IPR003657WRKY domain
PROSITE profilePS5081122.114155266IPR003657WRKY domain
SMARTSM007742.6E-29160265IPR003657WRKY domain
PfamPF031061.1E-7161183IPR003657WRKY domain
SuperFamilySSF1182902.48E-14225265IPR003657WRKY domain
PfamPF031063.5E-13226263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-31227264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MFPSKVSAVL NQGLVEDHMS FCAQILPLSH PSFPPHGIQQ TTGGLDMGKG FASYLREGLP  60
SMLPRYRAAP SDDDGIGQFG ASSEQRSSNN LWSWSEQEGD LGDKRSSAGA EDDHNKKNNS  120
SNHDIHRLPV GAIGMKKVKT RKNVRDPRFC FKTLSEVDVL DDGYKWRKYG QKFVKNTQHP  180
RWYILYSDLC SWFLCGVGAP TVTKILMEMA MRIRFILLSE DDFIVNRSYY RCTEDNCRVK  240
KRVERFAEDP RMVITTYEGR HTHSPSHDED DSRASDPINS LW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808698.11e-170probable WRKY transcription factor 13
SwissprotQ9SVB76e-48WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A2H3Z5I31e-168A0A2H3Z5I3_PHODC; probable WRKY transcription factor 13
STRINGXP_008808698.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-50WRKY DNA-binding protein 13