PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s664941g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 504aa MW: 55123.7 Da PI: 4.1555

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s664941g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.8	3.8e-18	37	89	2	55
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaee 55 ppGfrFhPtdeelv +yLk+kv++++++l +i +vd+yk+ePw+Lp + ++e+ PDK_30s664941g001 37 PPGFRFHPTDEELVLYYLKRKVSRRRFRL-PMIGDVDVYKCEPWELPGRRESES 89 8***********************999.88*************5444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-19	34	85	IPR003441	NAC domain
PROSITE profile	PS51005	16.536	36	201	IPR003441	NAC domain
Pfam	PF02365	2.9E-8	37	94	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MGAAPECRGP RGRSGGDDGV EDEGAAGAAL GDPKWWPPGF RFHPTDEELV LYYLKRKVSR 60 RRFRLPMIGD VDVYKCEPWE LPGRRESESE RIGFLILGHM LLFPLDSYAL YKVFRKSGPG 120 PKNGEQYGAP FIEEEWEDDG ENNSSRNQNS KEDTASEHPY SVSSAGMPGD EGSRLPMDFL 180 EDFSLQLSNE LQPSKCSAYV SEINAEAEVG SHTAVPCLVD ANFGERNLNC CELSGEEQQS 240 EIDKPDPACM QPAKDPAITS ISTCSEQDQF RVDEEFLEIK DFNDPESVEW RVDDVINTDI 300 VQDAGGLYNS YDYFDAPMFL AEDFDALDGA VQNPYFYETR ESDITSELWT YEQDFSAATA 360 AESNDVIVAP PASGAVYAST PSNPGDNTQG QISPVRSASD SWFGSALSAL LKSVPSSPAI 420 ASENALISRA LRRVSSFRAG QNGAQEPNGT TGGGTLASGR QRESHNGGFL FTSFLVGLVA 480 VFWVLTIGAA VKIFKGLWDK FVLS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MGAAPECRGP RGRSGGDDGV EDEGAAGAAL GDPKWWPPGF RFHPTDEELV LYYLKRKVSR  60
RRFRLPMIGD VDVYKCEPWE LPGRRESESE RIGFLILGHM LLFPLDSYAL YKVFRKSGPG  120
PKNGEQYGAP FIEEEWEDDG ENNSSRNQNS KEDTASEHPY SVSSAGMPGD EGSRLPMDFL  180
EDFSLQLSNE LQPSKCSAYV SEINAEAEVG SHTAVPCLVD ANFGERNLNC CELSGEEQQS  240
EIDKPDPACM QPAKDPAITS ISTCSEQDQF RVDEEFLEIK DFNDPESVEW RVDDVINTDI  300
VQDAGGLYNS YDYFDAPMFL AEDFDALDGA VQNPYFYETR ESDITSELWT YEQDFSAATA  360
AESNDVIVAP PASGAVYAST PSNPGDNTQG QISPVRSASD SWFGSALSAL LKSVPSSPAI  420
ASENALISRA LRRVSSFRAG QNGAQEPNGT TGGGTLASGR QRESHNGGFL FTSFLVGLVA  480
VFWVLTIGAA VKIFKGLWDK FVLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-12	37	84	16	63	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796460.1	0.0	NAC domain-containing protein 17-like
Refseq	XP_026662323.1	0.0	NAC domain-containing protein 17-like
TrEMBL	A0A2H3YCH7	0.0	A0A2H3YCH7_PHODC; NAC domain-containing protein 17-like
STRING	XP_008796459.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18512	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	8e-19	NAC domain containing protein 28