PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s664141g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22140.4 Da PI: 10.0115 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.3 | 5.3e-18 | 25 | 111 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 +k++ ++++fF++ +++ya+g+rk+r+ ++ +W++tgk+ +vl+ +g ++g +k+Lv+yk ++ g+ k++Wvmh+y++ PDK_30s664141g002 25 IKKDGSSVHFFHRISNAYASGHRKRRKihddcdksEERVRWHKTGKTIPVLE-NGVHKGWRKILVLYKSSKGGGKpdKANWVMHQYHI 111 45667789******************86777777655899************.999***********7665544333*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.354 | 1 | 130 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-21 | 26 | 130 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-6 | 32 | 111 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MKESATRIPK ISLVLATKSF FAIGIKKDGS SVHFFHRISN AYASGHRKRR KIHDDCDKSE 60 ERVRWHKTGK TIPVLENGVH KGWRKILVLY KSSKGGGKPD KANWVMHQYH IGTDKDEEDG 120 ELVVSKIFFQ QQAKQIDNSG IDQVNEEPDM FAARAAEWGE RGKMLVWLCC PSFSSALCSL 180 IFRQETGRTR NFCI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008812203.1 | 4e-91 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | O49459 | 8e-40 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2H3ZDK2 | 1e-89 | A0A2H3ZDK2_PHODC; SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
STRING | XP_008812203.1 | 2e-90 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 3e-42 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|