PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s660861g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 397aa    MW: 45426.3 Da    PI: 5.457
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s660861g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.8e-36161062101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sws ++ sf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++l
  PDK_30s660861g001  16 FLTKTYDMVDDPSTNSIVSWSPTNASFIVWKPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEDFIRGQRHL 98 
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l++i+r+k
  PDK_30s660861g001  99 LKNIHRRK 106
                        ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.08E-3611105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.3E-4012105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-6512105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-211639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-215466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-216779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEGSQGGSGS NSPPPFLTKT YDMVDDPSTN SIVSWSPTNA SFIVWKPPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKID PDQWEFANED FIRGQRHLLK NIHRRKPIHS HSLQHQGNSG  120
PLAESERREL EEEIERLNCE KGLLISELQS HAQQQHGMEQ QMQSLEERLH TMEHRQRHMM  180
AFLTEIVQKP GFFSNFVQQS EFHSKKRRLP KANYFCEDAN MEEKRIMSFQ GTSSEKSDIA  240
SMHAFDIEPF EKMESSLNSL ENLFRDIDSS PELAESTSYA ESPALPLTEI HTDIRSKASE  300
IDVNAEPAAP ECDSSRDRAA GTAASTVPTG VNDVFWEQFL TETPGSSDTQ EVQSERRDAN  360
DRRSEAKMAE RGNIWWSRKN VDHLADKMGH LTSAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-28610519129Heat shock factor protein 1
5d5v_B1e-28610519129Heat shock factor protein 1
5d5v_D1e-28610519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776669.10.0heat stress transcription factor A-4b-like
SwissprotQ94J161e-142HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A2H3ZHW90.0A0A2H3ZHW9_PHODC; heat stress transcription factor A-4b-like
STRINGXP_008776668.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-87heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]