PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s657833g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 688aa    MW: 76115.7 Da    PI: 5.2737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s657833g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.21.1e-2981231128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lp GfrFhPtdeelv++y   + ++ + +           k+ P+++ ++++         ++ d+kya+g+r+nrat++gyWkatgkd+ +
  PDK_30s657833g001   8 LPLGFRFHPTDEELVTHYSSGRSTAGSRPR---------WKSSPRSMSASAS-------HGTSLDRKYANGHRSNRATEAGYWKATGKDRVI 83 
                        699***************998888877666.........6899****73322.......236789*************************** PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         sk    +++++g+kktLvf++grapkg +t+W+mheyr 
  PDK_30s657833g001  84 RSKaasaRHSVIGMKKTLVFHRGRAPKGIRTHWIMHEYRT 123
                        **988877788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-376144IPR003441NAC domain
PROSITE profilePS5100532.1648144IPR003441NAC domain
PfamPF023651.1E-189122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MTIALGSLPL GFRFHPTDEE LVTHYSSGRS TAGSRPRWKS SPRSMSASAS HGTSLDRKYA  60
NGHRSNRATE AGYWKATGKD RVIRSKAASA RHSVIGMKKT LVFHRGRAPK GIRTHWIMHE  120
YRTTEPEFES GDQGGYVLYR LFKKPEERGS NTKADEMERS GFSPTPTKSS PDGTLHEADV  180
MEEISTPLNQ KSSESGLREE PQSLPDSVEQ QRTGIKRWLA DEADCSATYS VKLDESFCNV  240
VSDNDAKTGV HDVSTEYHGP HHQQIDSNGF PNISSPMLPY TDSLDVDNAD QDSFHMFLDA  300
ILSNPDEYST GASDVQKNSV AETVPRHGIW DSASFRDSGT SSDIDTEAGL PQEPVGLEAS  360
ECFEEPSFLL NDPSQMNSSY GCPEIKPQLS ALYENASLLP YDSTGPDVYS VDSTTESLQD  420
LFNSMEESSN QKNIADNGDG REVTGIKFRV RHLQHPSDSK NISEQQGTAT RRIRLQNSIQ  480
NASFACSRSE SNSSEDDHED KETMRKALQD LVDSTEESWT PKVTPSNEDG FEGTGIKIKT  540
RKAQYPPSLN KLPSKQGIVA RRIRLQASLS SIAGESSSSK DDQAGEHVDD NIAEFSEISK  600
PDLPDKIEQL SIHDDATHSS EFHQESKPML RLRTKGTYDN ANVPKDPPSH PRISRTGSAV  660
AFVVWLVLSV ILLLMCLGIW RSINSQYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-27714416165NO APICAL MERISTEM PROTEIN
1ut4_B2e-27714416165NO APICAL MERISTEM PROTEIN
1ut7_A2e-27714416165NO APICAL MERISTEM PROTEIN
1ut7_B2e-27714416165NO APICAL MERISTEM PROTEIN
4dul_A2e-27714416165NAC domain-containing protein 19
4dul_B2e-27714416165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788722.10.0protein NTM1-like 9 isoform X3
TrEMBLA0A2H3XTW40.0A0A2H3XTW4_PHODC; protein NTM1-like 9 isoform X3
STRINGXP_008788721.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.24e-42NAC 014