PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s656261g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 446aa MW: 47895.8 Da PI: 8.1417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s656261g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	2e-09	286	334	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PDK_30s656261g003 286 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 334 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.11E-10	281	338	No hit	No description
SuperFamily	SSF47459	3.53E-17	281	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.516	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-17	284	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	286	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-10	289	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MGAVPANPAI AMGQGVSMTS SSCPSVPGVD FFGPGVWSHP ANPQNLGFSN AQTTRGASSS 60 IPIGKPVAVS SKGMFLQAVP GVLPPSLSHF PSDSAFVERA ARFSCFSGAN FGGMMNPFGS 120 SESLTAHSNA SRGVAGTQGL KSELNMTEVP RDITVPADHG SSSGSPSKNR RDKGSSLVGD 180 LSNACREANF TEVDQEKSPE LANAAGNSSS SDLGSKKRKR SNQDMELDQV QRGTQLSMEN 240 TKDNTETKQN LEQSNSKPIG KLAKDSTEDL KEDYIHVRAR RGQATNSHSL AERVRREKIS 300 ERMKYLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPR VDFNIEGLLS 360 KDLFQFRGGS QSMIGFSPDM IHPQLHPSQQ GLVQAGISGM GSPSDAVRRV MNAQLAVMNG 420 FKEPTPQLLQ LVCNCPEDEL TKLQYN

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MGAVPANPAI AMGQGVSMTS SSCPSVPGVD FFGPGVWSHP ANPQNLGFSN AQTTRGASSS  60
IPIGKPVAVS SKGMFLQAVP GVLPPSLSHF PSDSAFVERA ARFSCFSGAN FGGMMNPFGS  120
SESLTAHSNA SRGVAGTQGL KSELNMTEVP RDITVPADHG SSSGSPSKNR RDKGSSLVGD  180
LSNACREANF TEVDQEKSPE LANAAGNSSS SDLGSKKRKR SNQDMELDQV QRGTQLSMEN  240
TKDNTETKQN LEQSNSKPIG KLAKDSTEDL KEDYIHVRAR RGQATNSHSL AERVRREKIS  300
ERMKYLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPR VDFNIEGLLS  360
KDLFQFRGGS QSMIGFSPDM IHPQLHPSQQ GLVQAGISGM GSPSDAVRRV MNAQLAVMNG  420
FKEPTPQLLQ LVCNCPEDEL TKLQYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	220	KKRKRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797585.1	0.0	transcription factor bHLH49-like isoform X1
TrEMBL	A0A2H3YEH3	0.0	A0A2H3YEH3_PHODC; transcription factor bHLH49-like isoform X1
STRING	XP_008797585.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-90	bHLH family protein