PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s655861g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 291aa    MW: 32541.7 Da    PI: 9.1961
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s655861g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.45.9e-3370128160
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp kkk+e+s  d++++ei+Y+g Hnh+k
  PDK_30s655861g003  70 LDDGYNWRKYGQKPVKGSENPRSYYKCTFPNCPRKKKLEKSL-DGQITEIVYKGAHNHPK 128
                        59****************************************.***************85 PP
2WRKY1054e-33210268159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d + v++tYeg+Hnh+
  PDK_30s655861g003 210 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTLGCPVRKHVERASHDLREVITTYEGKHNHD 268
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-2959129IPR003657WRKY domain
PROSITE profilePS5081123.45665129IPR003657WRKY domain
SuperFamilySSF1182906.54E-2566129IPR003657WRKY domain
SMARTSM007743.9E-3570128IPR003657WRKY domain
PfamPF031068.0E-2471127IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-37195270IPR003657WRKY domain
SuperFamilySSF1182902.62E-29202270IPR003657WRKY domain
PROSITE profilePS5081138.09205270IPR003657WRKY domain
SMARTSM007743.4E-38210269IPR003657WRKY domain
PfamPF031061.5E-25211268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAKSPSTHEK SWNYQQQSDN TNVKAELVAP SRANYSGILQ ANTQANNGGQ QSNFSHSTQA  60
AQTLRGQGTL DDGYNWRKYG QKPVKGSENP RSYYKCTFPN CPRKKKLEKS LDGQITEIVY  120
KGAHNHPKPQ STRRNSASSQ AFQASENSSV SFGDDDLDVS KSGADEFDED EPDAKLWRKD  180
GENEGISASG NRTVREPKVV VQTTSDVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTTLG  240
CPVRKHVERA SHDLREVITT YEGKHNHDVP AAQEFKIYPA NNRCGTKHIP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3755271278Probable WRKY transcription factor 4
2lex_A2e-3755271278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792187.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-118WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3Y1T60.0A0A2H3Y1T6_PHODC; WRKY transcription factor WRKY24
STRINGXP_008792187.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-98WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]