PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509691g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 364aa    MW: 40626.7 Da    PI: 10.094
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509691g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.3e-132985155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                         s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  PDK_30s65509691g003 29 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 85
                         57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-152995IPR016177DNA-binding domain
PfamPF008471.2E-82985IPR001471AP2/ERF domain
SMARTSM003802.1E-183099IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-123094IPR001471AP2/ERF domain
PROSITE profilePS5103218.4133093IPR001471AP2/ERF domain
PRINTSPR003672.8E-53142IPR001471AP2/ERF domain
PRINTSPR003672.8E-57595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKKVRKERIC TAKERISRMP PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK  60
GKQGAYDDEE AAARAYDLAA LKYWGAGTLI NFPVSDYARD LEEMQTVSKE EFLVSLRRKS  120
SAFSRGFPKY RGLSRQPQST RWDASLGQMI GNEYCNNLNC STSRDVATDG KYAGSFGMER  180
KVDLTSYIRW WIPKKTRQSE STSNAEGAAR ELRTLECSVR PTEPYQLPSL GLPRKGKPHA  240
RGVSACSILS QSEAFKNFLE KSSKTSETKD DASYKDMEHG KAVPRFFSGG GLDRSGVSLG  300
LSELAVQRTP YAFAPPVSAP SRATWNSVDP VPDPVFWTSL VPPSGQSLTT MVQTLPATSY  360
PSNT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665879.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-112AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3Q0IG510.0A0A3Q0IG51_PHODC; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_008809562.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-110AP2 family protein