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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s6550959g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 23178.3 Da PI: 7.6333 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 2.9e-30 | 111 | 169 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ +gC vkk+ver++ed ++v++tYeg Hnh PDK_30s6550959g005 111 LDDGFKWRKYGRKSVKSSPNPRNYYRCSKEGCAVKKRVERDSEDSRYVITTYEGVHNHA 169 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-31 | 100 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-27 | 103 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.502 | 106 | 171 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-33 | 111 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-24 | 112 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAAPLGLTDM SYDSPFFLVD GPSKVPGGGF IPAVVSDDCM LGVSHCVVPD EGLLFEEYSS 60 VAGDPTKLQV ASNCVLNAPA SRMAMNGWNI MKKVDTGCRI GFRTKSQVDI LDDGFKWRKY 120 GRKSVKSSPN PRNYYRCSKE GCAVKKRVER DSEDSRYVIT TYEGVHNHAS PGTLCCNFNP 180 RQAKTSAWVS YGQLPFLSEQ DAGCSLFFSE L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-26 | 99 | 171 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808912.1 | 1e-158 | probable WRKY transcription factor 50 | ||||
TrEMBL | A0A2H3Z6K6 | 1e-157 | A0A2H3Z6K6_PHODC; probable WRKY transcription factor 50 | ||||
STRING | XP_008808912.1 | 1e-157 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 4e-39 | WRKY DNA-binding protein 51 |