PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509418g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 298aa    MW: 33296.4 Da    PI: 5.0912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509418g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.64.6e-22127188359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+++++++prsYYrCt +   gCp++k v++++  +dp  + +tY+ +H+++
  PDK_30s65509418g001 127 DGHQWRKYGQKQINNAKYPRSYYRCTNSkdqGCPATKTVQQEDrdSDPPKFSVTYSMQHTCK 188
                          9*************************988889*******98761157889**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-25111189IPR003657WRKY domain
SuperFamilySSF1182901.18E-21118188IPR003657WRKY domain
SMARTSM007741.4E-32125189IPR003657WRKY domain
PROSITE profilePS5081117.282127185IPR003657WRKY domain
PfamPF031062.0E-25127188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKQQMEPSST SELLACDQEA AIKEINRGHE LMTQLRALLM PLLPAGVWSE LAGDLFEEIL  60
KCSTAALSGL RNGGCGMSAA SDSDDDRRNK VFDGKRKSTE EREKPDGRKR RRQLNSWSIV  120
TSVPHYDGHQ WRKYGQKQIN NAKYPRSYYR CTNSKDQGCP ATKTVQQEDR DSDPPKFSVT  180
YSMQHTCKDV DINSPFVMDS APRNTSLLGC ESVSLCYQPS PSFLFTENQS QGNSLLIGGK  240
LPTDELLSGL LEPATPIGTP TSVDEISNIF SPFYADWEMM MDAVDLTEAK TYEKGSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-161271881069OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194111KRKSTEEREKPDGRKRRR
2107111RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788524.10.0probable WRKY transcription factor 70
TrEMBLA0A2H3XTD80.0A0A2H3XTD8_PHODC; probable WRKY transcription factor 70
STRINGXP_008788524.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-22WRKY DNA-binding protein 70