PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s65509337g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 201aa MW: 22748.7 Da PI: 8.6149 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55.6 | 1.4e-17 | 13 | 101 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + L++a++e+ +l+rg+l++ +We+v+ + +++ +s +qCk+k++nl+kryk + ++ +++ ++s++p+f+++e PDK_30s65509337g004 13 EWSDTAIGSLLDAYTERYVQLNRGNLRGRDWEDVATLVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLAVSHWPWFKKME 101 5********************************97766665599999**************************98.78889********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.1E-21 | 11 | 103 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MSSSGDYRKD REEWSDTAIG SLLDAYTERY VQLNRGNLRG RDWEDVATLV SDRCDKQKAG 60 KSVEQCKNKI DNLKKRYKVE CQRLSSGGLA VSHWPWFKKM EQIVGSSSSL KALADEDTSG 120 AIGGSAVVTR QMKRWEDMLL ASSKTLSFMF EGGRWKSLFI QQNSHAVAIT VSCWKKETGN 180 LGRSIENDEE KEEIGKIFHI I |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008777884.1 | 5e-93 | uncharacterized protein LOC103697738 | ||||
TrEMBL | A0A2H3X3V2 | 1e-91 | A0A2H3X3V2_PHODC; uncharacterized protein LOC103697738 | ||||
STRING | XP_008777884.1 | 2e-92 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10030.2 | 2e-57 | Trihelix family protein |