PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s6550926g037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 453aa MW: 49340.9 Da PI: 5.0069 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.8 | 3.1e-14 | 356 | 405 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 Vr++k +g+W A+I + g r k ++lg+f+t+eeAa+a++ a+ +l+g PDK_30s6550926g037 356 YVRRRK-DGKWQARIGRV---GdSRdaKDIYLGTFDTEEEAAEAYDIAAIELRG 405 599888.9*******997...443347*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.353 | 199 | 334 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-7 | 199 | 340 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-8 | 199 | 221 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-8 | 296 | 335 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-6 | 303 | 335 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.517 | 352 | 413 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-15 | 357 | 415 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.4E-22 | 357 | 419 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.78E-20 | 357 | 415 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.8E-17 | 357 | 413 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-8 | 357 | 405 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MSEEKRSPDP LEDAEPSENP ASLRPSLDDS GERSESTAAG EKVAAEPSEA AGHQEDAACQ 60 VDSVVNAAVE EKSDPLEATA AEKAESLEEA AAGKERVRSE VPSRNGEDHD EKKADSSNAT 120 DVSGLVVAMG VPVLDKSSSR SGEELNATST DVEKAESIEV TNGDISVAAV AGPGKNPDKK 180 VGTLLAAAMK KYAAPRSSSY HGVTRLKWSG KFEAHLWDNT SQVEGRKRKG KHVTMNLCLS 240 IKVRRLGIGP RIGAALAQCQ YGMVPVSNCM VRCAPYCLVR AGTANHAFNE HIFFQKATLS 300 KEGSYDSEEK AARAHDLAAL KYWGPNPNTK LNFPVSDYEK ELETMKTMSQ EEYVAYVRRR 360 KDGKWQARIG RVGDSRDAKD IYLGTFDTEE EAAEAYDIAA IELRGVHAVT NFDISNYCPR 420 FCVVVRMECN GKITECSKRE TDLNIFKDDF DAT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008807712.1 | 1e-160 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Refseq | XP_008807713.1 | 1e-160 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
TrEMBL | A0A2H3Z361 | 1e-159 | A0A2H3Z361_PHODC; AP2-like ethylene-responsive transcription factor BBM1 | ||||
STRING | XP_008807712.1 | 1e-160 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.3 | 5e-37 | AINTEGUMENTA-like 6 |