PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s65509258g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 299aa    MW: 32752.5 Da    PI: 6.7099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s65509258g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027139161123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C+ C++ F++   L  H+++H
  PDK_30s65509258g001 139 YICSFCKREFRSAQALGGHMNVH 161
                          89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-6136165No hitNo description
PfamPF139126.9E-7139162IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99139166IPR007087Zinc finger, C2H2
SMARTSM003550.006139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVANVALGES ELNHESNVLS SSISHAKVPT PLTCGPGRTR GELEQGVLTE MAKGVVPRMG  60
FSVSGIQFDG HFCGPITLRL DWTEGSMERC GRSSRDNSNN HNNDNNNKIR EPWSFGQVGK  120
GDTVCSDLIG GFSWPPRSYI CSFCKREFRS AQALGGHMNV HRRDRARLRQ SLQWDPPLSN  180
HNPNPNPRGT LIPNLNISPP SNTGDAKLSP RTNRFPSLLS SPSCSTSLSQ LFSSRGGHFN  240
GMEAVKAFLG VEELRDLVKE GTADAFRKEG EVVRLDLEIG TSGDSEEDDL DLELRLGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-13134161229superman protein
2l1o_A7e-13134161229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787987.11e-155transcriptional regulator SUPERMAN-like
TrEMBLA0A2H3XS511e-154A0A2H3XS51_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008787987.11e-155(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-24C2H2 family protein