PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s6550914g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 20347.1 Da PI: 4.6001 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 20 | 41 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++Cp C +sF++ + Hi PDK_30s6550914g002 20 FECPVCARSFPSEADVAAHIDA 41 89*****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd09212 | 3.20E-18 | 58 | 119 | No hit | No description |
SuperFamily | SSF143503 | 3.14E-20 | 71 | 153 | IPR018997 | PUB domain |
Pfam | PF09409 | 8.5E-19 | 72 | 145 | IPR018997 | PUB domain |
SMART | SM00580 | 2.0E-20 | 72 | 139 | IPR018997 | PUB domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEDVKDKMKG LMKKSSVNSF ECPVCARSFP SEADVAAHID ACLTQDAATA PLGNGVVAEH 60 VSTFLSAVSA DGAVEVVLKL LRNVVREPEN EKFRRIRMGN PKIKEAVGEV KGGVELLECL 120 GFELGEEGGE VWATMHVPSE EQLAVVRDAV SFLESWKSED SNPTSAETLG TVVESSDRQK 180 KIDRQVVS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008803480.1 | 1e-121 | plant UBX domain-containing protein 2 isoform X1 | ||||
Refseq | XP_008803481.1 | 1e-121 | plant UBX domain-containing protein 2 isoform X2 | ||||
TrEMBL | A0A2H3YT95 | 1e-120 | A0A2H3YT95_PHODC; plant UBX domain-containing protein 2 isoform X2 | ||||
TrEMBL | A0A2H3YTA3 | 1e-119 | A0A2H3YTA3_PHODC; plant UBX domain-containing protein 2 isoform X1 | ||||
STRING | XP_008803480.1 | 1e-120 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6756 | 3 | 3 |