PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s65509148g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 142aa MW: 15637 Da PI: 10.3292 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 31 | 53 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H PDK_30s65509148g001 31 FECKTCSRRFSSFQALGGHRTSH 53 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 17.1 | 1.5e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg++Fs L H+r+H PDK_30s65509148g001 76 HQCSICGQRFSMGQALGGHMRRH 98 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.5E-12 | 30 | 55 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.23E-8 | 30 | 98 | No hit | No description |
SMART | SM00355 | 0.42 | 31 | 53 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.305 | 31 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.9E-11 | 75 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.284 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 76 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MKTANLLLSL SCGGNKPEKI RRRTKTEDGV FECKTCSRRF SSFQALGGHR TSHKQPRLQG 60 LGFAPTKGST LKTNVHQCSI CGQRFSMGQA LGGHMRRHKP PSEAFPEKKA GVEKSMPDLN 120 VLPLEDDCSR EGSHGVLLEL FV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008788150.1 | 1e-101 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 2e-24 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A2H3XSQ1 | 1e-99 | A0A2H3XSQ1_PHODC; zinc finger protein ZAT11-like | ||||
STRING | XP_008788150.1 | 1e-100 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 5e-27 | C2H2 family protein |