PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1206201g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 196aa    MW: 21457.6 Da    PI: 8.8661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1206201g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-212776255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg++ taeeAa a+++a+++++g
  PDK_30s1206201g001 27 HYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTYNTAEEAAMAYDEAALRFKG 76
                        7********.**********94....36***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-332685IPR001471AP2/ERF domain
PROSITE profilePS5103224.8032784IPR001471AP2/ERF domain
SMARTSM003802.9E-372790IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-232785IPR016177DNA-binding domain
CDDcd000182.67E-322785No hitNo description
PfamPF008473.7E-152776IPR001471AP2/ERF domain
PRINTSPR003671.0E-112839IPR001471AP2/ERF domain
PRINTSPR003671.0E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAGPGSGSME RQLSQPSEEQ GNVRRRHYRG VRQRPWGKWA AEIRDPRKAA RVWLGTYNTA  60
EEAAMAYDEA ALRFKGTKAK LNFPERVQAR TDLGFLVSRG IPERPPEPIT PQAAASYPDL  120
LHYAQLLQSG DEDLQNVASG LFIGDPFTSG SSQVSQPSIA GSSQEFSDFS SQLGSSSSSS  180
SRPRGDQKDK DSNQQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-262688467ATERF1
3gcc_A4e-262688467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811102.11e-141ethylene-responsive transcription factor ERF113-like isoform X1
SwissprotQ9FH545e-43EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2H3ZB451e-139A0A2H3ZB45_PHODC; ethylene-responsive transcription factor ERF113-like isoform X1
STRINGXP_008811102.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-25ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]