PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1200341g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 305aa    MW: 34244.8 Da    PI: 5.5981
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1200341g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.7e-53181461129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelv++yL+ kv +  l     i evd++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+e
  PDK_30s1200341g002  18 LPPGFRFHPTDEELVTFYLASKVFNGGLCG-IDIVEVDLNRCEPWELPDAAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDRE 107
                         79*************************877.55***************8888999************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         v+s+ +g+lvg+kktLvfykgrap+gekt+Wv+heyrle
  PDK_30s1200341g002 108 VHSAsSGALVGMKKTLVFYKGRAPRGEKTKWVLHEYRLE 146
                         **9878889****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-639166IPR003441NAC domain
PROSITE profilePS5100558.86418166IPR003441NAC domain
PfamPF023653.0E-2719145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAEVVWDLFG EDVGEQGLPP GFRFHPTDEE LVTFYLASKV FNGGLCGIDI VEVDLNRCEP  60
WELPDAAKMG EREWYFFSLR DRKYPTGLRT NRATGAGYWK ATGKDREVHS ASSGALVGMK  120
KTLVFYKGRA PRGEKTKWVL HEYRLEGDYC RHTCKEEWVI CRIFNKTGEK KNSYYPNPTC  180
SLDPSYSSPN PGLPPFIDLQ PGENPIQILL QSHQPFFHQE VNPFLPLPLP EPLHPTTIPS  240
PLKPQCPPKD NPSPHEEQVS SWLDTYLQNP FLYDTGLAQL GLGGAVHDLP FLGLTATGES  300
GPLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-491416911171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6222730.0HM622273.1 Phoenix dactylifera cup-shaped cotyledon 3-related protein (CUC3) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804254.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8512e-98NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2H3YV280.0A0A2H3YV28_PHODC; protein CUP-SHAPED COTYLEDON 3
STRINGXP_008804254.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-100NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]