PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1197911g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 365aa    MW: 40734 Da    PI: 4.9203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1197911g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.3e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        + +WT+ Ed +l d+++++  ++W++I++  g+ R++k+c++rw +yl
  PDK_30s1197911g001 14 KRPWTPAEDMKLTDYIQKHRLENWHAIPKLAGLLRCGKSCRLRWINYL 61
                        579*****************************99************97 PP
2Myb_DNA-binding49.41.1e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE+  ++++ +++G++ W++Ia++++ gRt++++k+ w+++l
  PDK_30s1197911g001  67 RGNFTQEEEATIIKLQELMGNK-WSKIASCLP-GRTDNEIKNVWNTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.529961IPR017930Myb domain
SuperFamilySSF466899.73E-3011108IPR009057Homeodomain-like
SMARTSM007174.9E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-131461IPR001005SANT/Myb domain
CDDcd001672.07E-91661No hitNo description
Gene3DG3DSA:1.10.10.604.1E-241668IPR009057Homeodomain-like
PROSITE profilePS5129424.09462116IPR017930Myb domain
SMARTSM007178.2E-1566114IPR001005SANT/Myb domain
PfamPF002494.9E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2669116IPR009057Homeodomain-like
CDDcd001671.43E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGRGPCCEKV GLKKRPWTPA EDMKLTDYIQ KHRLENWHAI PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TQEEEATIIK LQELMGNKWS KIASCLPGRT DNEIKNVWNT HLKKRLAPKE  120
SSPSSNKTKD PNPSSPSKSS ISYVNDDNIK NLEKNNSLKV ESSRDLANLM TEIFMEPDQC  180
NMRIEGHEPS VDDCRESSSI SSLESHITSY EGKNNQDCLI QVPEIPIDSE IWSMVDDDSC  240
FLTPEVGPVV EDGAHNNATS SIVDSKGEGE TKGWLGCLEE EIDLWGTMDA NAVKQLGPWG  300
CHGGVVEEFD PVSLLSSKET LPTFCHESCA SALFNTDVIV VPIIADPIGY PTRSDPNVTN  360
FMRPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24121165108B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787349.10.0transcription factor MYB13-like
TrEMBLA0A2H3XQQ70.0A0A2H3XQQ7_PHODC; transcription factor MYB13-like
STRINGXP_008787349.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-59myb domain protein 63