PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 658aa MW: 75802.8 Da PI: 7.6195

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1191211g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.4e-20	47	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g ++e++ +++k +r+r+++r+gC+a +++ k+ +w+vt +++ HnH PDK_30s1191211g001 47 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGLPQEKQLDDSKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWCVTGFSNVHNH 137 6*************999887455667****************9***************98887676789********** PP FAR1 88 ela 90 e+ PDK_30s1191211g001 138 EFL 140 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-17	47	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-20	263	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.371	539	575	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-7	546	572	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	550	577	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MDHTDLSPEV VDSIDELPEG TVLTKQTSVN LVPFIGQRFV SQDAAYEFYC SFAKQCGFSI 60 RRHRTRGKDG VGRGITRRDF TCHRGGLPQE KQLDDSKLQR NRKSSRCGCQ AYMRIVKRAD 120 FDVPEWCVTG FSNVHNHEFL KSNQVHHFPA YCTISADDKS RICMFSKAGI SVRQMLRLTE 180 LEKGVKLGCL QFTEIDVRNL LQSFKNLDRD HDAIDLLTMC KKIKDEDPNF KYEFKIDGCN 240 RLEHISWSYA SSVQLYEAFG DAVVFDTTHR LDAYDMLLGV WIGVDNHGMN CFFGCVLLRD 300 ENIQSFSWAL KSFLGFTRGK APQTILTDQN MWLKEATSVE MPNTKHAFCI WRIIAKFSDW 360 FSVLLGSRYD NWKAEFHRLY NMQVVEEFEV EWRKMVNAYA LHTNKHIASL YALRTFWALP 420 YLRCYFFAGI TSAVYSESIS AFTQQFLSAQ SQPDNFVEQV AAILDFKDQI GPKQKSQRKL 480 HKIRLKTGSP IESHAATVLT PYAFCKLQEE LVLAPQYASF PLEDGSFLVR HHTQMDGGCK 540 VIWAPQEELI SCSCHHFEFT GILCRHILRI LSTNNCFHIP DDYLPIRWRC INSPLTKCSR 600 TAPREHAERV HLLQAMVSAL MAESVESEER LEVASEQVAM VLSRIREFPL STHEVRKL

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MDHTDLSPEV VDSIDELPEG TVLTKQTSVN LVPFIGQRFV SQDAAYEFYC SFAKQCGFSI  60
RRHRTRGKDG VGRGITRRDF TCHRGGLPQE KQLDDSKLQR NRKSSRCGCQ AYMRIVKRAD  120
FDVPEWCVTG FSNVHNHEFL KSNQVHHFPA YCTISADDKS RICMFSKAGI SVRQMLRLTE  180
LEKGVKLGCL QFTEIDVRNL LQSFKNLDRD HDAIDLLTMC KKIKDEDPNF KYEFKIDGCN  240
RLEHISWSYA SSVQLYEAFG DAVVFDTTHR LDAYDMLLGV WIGVDNHGMN CFFGCVLLRD  300
ENIQSFSWAL KSFLGFTRGK APQTILTDQN MWLKEATSVE MPNTKHAFCI WRIIAKFSDW  360
FSVLLGSRYD NWKAEFHRLY NMQVVEEFEV EWRKMVNAYA LHTNKHIASL YALRTFWALP  420
YLRCYFFAGI TSAVYSESIS AFTQQFLSAQ SQPDNFVEQV AAILDFKDQI GPKQKSQRKL  480
HKIRLKTGSP IESHAATVLT PYAFCKLQEE LVLAPQYASF PLEDGSFLVR HHTQMDGGCK  540
VIWAPQEELI SCSCHHFEFT GILCRHILRI LSTNNCFHIP DDYLPIRWRC INSPLTKCSR  600
TAPREHAERV HLLQAMVSAL MAESVESEER LEVASEQVAM VLSRIREFPL STHEVRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795528.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2H3Y9M3	0.0	A0A2H3Y9M3_PHODC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRING	XP_008795528.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15171	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]