PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1190171g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 273aa MW: 29693.7 Da PI: 10.1861 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 151.2 | 1.9e-47 | 83 | 178 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 req++++P +nv+rim++vlP +akis+dak t+ ecvse+isf+t+ea+++cqre+rkti+++d++wa+++lGfedyv pl+ yl++yre PDK_30s1190171g001 83 REQEHYMPTTNVIRIMRRVLPMHAKISDDAKMTTLECVSEYISFITGEANERCQREQRKTITAEDVIWAMGKLGFEDYVGPLRRYLQRYRE 173 89***************************************************************************************** PP NF-YB 93 legek 97 eg++ PDK_30s1190171g001 174 SEGDQ 178 **997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-43 | 77 | 179 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.53E-33 | 85 | 179 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-20 | 89 | 152 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.6E-14 | 116 | 134 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 119 | 135 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.6E-14 | 135 | 153 | No hit | No description |
PRINTS | PR00615 | 7.6E-14 | 154 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MAGGGDGIPV FSRLPRISSV IPPHKPTKRS IKTRGGQAIR RRDQREPGGS RRSQGSAAGT 60 PVPPGGTAST ATAPAAQPQV NLREQEHYMP TTNVIRIMRR VLPMHAKISD DAKMTTLECV 120 SEYISFITGE ANERCQREQR KTITAEDVIW AMGKLGFEDY VGPLRRYLQR YRESEGDQRI 180 GLRGEHSPIF KQRRHPQIAA SPSVRSQPPL MCSSMLPPPP SSSLIMPPTA PPPFINHLSG 240 EGSGSGYFFG MYGGGDGAGT SNSEAPPTPD FYP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-49 | 79 | 173 | 3 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008798408.1 | 1e-134 | nuclear transcription factor Y subunit B-10-like | ||||
TrEMBL | A0A2H3YGD7 | 1e-133 | A0A2H3YGD7_PHODC; nuclear transcription factor Y subunit B-10-like | ||||
STRING | XP_008798408.1 | 1e-134 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-50 | nuclear factor Y, subunit B6 |