PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1183851g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 148aa MW: 16323.8 Da PI: 5.0655

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1183851g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	2	18	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka++L A++Y+k+Lq PDK_30s1183851g002 2 DKASVLGDAIKYLKQLQ 18 8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.6E-6	1	31	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-5	1	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MDKASVLGDA IKYLKQLQEK VKSLEEQNTK RTVESAVLVK KSQLSSDDVG SCDENFDGHP 60 SGESLPEIEA KMSEKSVLIK IHCEKSKGIL VEALSEIEKL HLTVINASVI PFASSSLDIT 120 VVAQVEEEFS MTLKDLVKKL NSAFRQFV

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790399.1	2e-99	transcription factor bHLH18-like
Refseq	XP_008790400.1	2e-99	transcription factor bHLH18-like
Refseq	XP_008790401.1	2e-99	transcription factor bHLH18-like
Refseq	XP_008790402.1	2e-99	transcription factor bHLH18-like
Swissprot	Q9T072	6e-41	BH025_ARATH; Transcription factor bHLH25
TrEMBL	A0A2H3XY29	5e-98	A0A2H3XY29_PHODC; transcription factor bHLH18-like
STRING	XP_008790398.1	9e-99	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4213	35	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-43	bHLH family protein