PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1183591g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 315aa MW: 36272.2 Da PI: 7.8289

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1183591g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174	4.4e-54	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi++vd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+ PDK_30s1183591g002 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIRDVDLNKLEPWDLKdKcRIGSePQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 99 69**************************.9***********943444332445**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl PDK_30s1183591g002 100 DKTIHLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 ************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-59	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.27	10	159	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MIPGNRQLTV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIRDVDLNKL EPWDLKDKCR 60 IGSEPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KTIHLSNSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD DESMEVQEDG WVVCRVFKKK NHPRGISSES VLEDDQFHPL 180 RANGCASMEQ KQNFQLPCNF SLDNNRMHLP QLLSSESTIP PLMPPASMDA LNLECYQNLI 240 NKLASTNGGG GLLPQEKFTG DWSILDKLLA SHQSLDQLIQ SKCHPSSQLM DMSSSVQRFP 300 FQYLGCEADF LKFSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	7	161	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	7	161	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	7	161	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	7	161	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	7	161	17	170	NAC domain-containing protein 19
3swm_B	2e-51	7	161	17	170	NAC domain-containing protein 19
3swm_C	2e-51	7	161	17	170	NAC domain-containing protein 19
3swm_D	2e-51	7	161	17	170	NAC domain-containing protein 19
3swp_A	2e-51	7	161	17	170	NAC domain-containing protein 19
3swp_B	2e-51	7	161	17	170	NAC domain-containing protein 19
3swp_C	2e-51	7	161	17	170	NAC domain-containing protein 19
3swp_D	2e-51	7	161	17	170	NAC domain-containing protein 19
4dul_A	2e-51	7	161	14	167	NAC domain-containing protein 19
4dul_B	2e-51	7	161	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786536.1	0.0	protein SOMBRERO-like
Swissprot	Q9MA17	1e-113	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A2H3XNU3	0.0	A0A2H3XNU3_PHODC; protein SOMBRERO-like
STRING	XP_008786536.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-105	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]