PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 298aa MW: 33217.8 Da PI: 9.1927

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1170901g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.4	1.2e-11	24	71	2	47
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT+eE +l+ da + + g+ +W+ +a++++ g++ +++s++ ++ PDK_30s1170901g002 24 GNWTQEENKLFEDALAHFDGDtpdRWEMVAAMIP-GKSVQDIISHYKDL 71 89******************************.*********875 PP
2	Myb_DNA-binding	46.1	1.2e-14	130	174	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W+ I+r + +Rt+ q+ s+ qky PDK_30s1170901g002 130 PWTEEEHKLFLLGLQKYGKGDWRNISRNFVHTRTPTQVASHAQKY 174 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.9	21	76	IPR017884	SANT domain
SMART	SM00717	4.2E-9	22	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-4	22	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-11	24	79	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-9	24	71	IPR001005	SANT/Myb domain
CDD	cd00167	7.44E-8	25	71	No hit	No description
PROSITE profile	PS51294	18.563	123	179	IPR017930	Myb domain
SuperFamily	SSF46689	6.88E-18	125	179	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-17	126	177	IPR006447	Myb domain, plants
SMART	SM00717	5.9E-13	127	177	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-12	127	173	IPR009057	Homeodomain-like
CDD	cd00167	3.48E-11	130	175	No hit	No description
Pfam	PF00249	9.2E-13	130	174	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEVLAPTTPY FPNSSWLLGP KRSGNWTQEE NKLFEDALAH FDGDTPDRWE MVAAMIPGKS 60 VQDIISHYKD LEEDVSHIEA GLIPFPGYSS SSFTLDWENS HRYEGSKPSY FVGAKRLGGR 120 PDQERKKGVP WTEEEHKLFL LGLQKYGKGD WRNISRNFVH TRTPTQVASH AQKYFIRLNS 180 GGRDKRRSSI HDITTVSLPN NGPPSPSQSS LLSLQSSSAA NTATSDQFSV IGDSNQPNEA 240 ASVFSPSSHG NQFMQPPHEV TSYGMKLSAQ NSQRGNLRGS TIGAHNMLFR MHPRQSRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-15	26	91	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008775057.1	0.0	transcription factor DIVARICATA-like isoform X1
Swissprot	Q8S9H7	5e-99	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2H3WX87	0.0	A0A2H3WX87_PHODC; transcription factor DIVARICATA-like isoform X1
STRING	XP_008775057.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	5e-87	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]