PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1170601g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 715aa    MW: 76832.2 Da    PI: 6.8127
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1170601g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08282303526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f+++G C++Gd C +aHg
  PDK_30s1170601g001 282 PCPEFRKGGACRRGDMCEYAHG 303
                         8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.17E-1513136IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0135787IPR002110Ankyrin repeat
PfamPF127962.0E-957126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.24757132IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.1E-1658137IPR020683Ankyrin repeat-containing domain
CDDcd002044.68E-1359135No hitNo description
SMARTSM002480.002392124IPR002110Ankyrin repeat
PROSITE profilePS5008811.88892127IPR002110Ankyrin repeat
SMARTSM003562.8E-5277304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4281305IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6282303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727282305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4311341IPR000571Zinc finger, CCCH-type
SMARTSM0035678313336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MNHLTVETDD SFSTLLELAA NNDAEAFRRS LDRDPSAVDE AGMWYGRKKG TNLMVLLHRT  60
PLMVAATYGS LDVLRLILSL SVVDVNRGCG PDNATALHCA ASGGALNAVD AVKILLAAGA  120
DPNAVDASGH RPADVIVVPP KSTDVKVVLE QLLGGSGCVA GGEEQQQRVL RVTTSSNSNS  180
NSNSPPLSSS PVEDGFPSSN LSSSPTDPPP PAVSEKKEYP IDPSLPDIKN SIYATDEFRM  240
YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGG ACRRGDMCEY  300
AHGVFECWLH PAQYRTRLCK DGTSCTRRVC FFAHTNEELR PLYMSTGSAV PSPRSATSAA  360
MEMAAAMGLM PGSPSSVSAM MSPFTPPMSP STNGMAHSSL CWPQPNASTL PLAGINLQSS  420
RLRSSLSARD MPVDDFSMMP DFNGQQLFHD LCYSRFASVP AGRSKVLAPS NLDELFSAEI  480
SSSPRYSSGQ GSVFSPSHKT AILNQFQQQQ HSMLSPINTN MFSQKAGDHQ QLPGHSSLLR  540
ASLGAPSPGR MSPRGDEPLS PMSARLAVFA QREKQQQTLR SLSSRHLGSG TSPIVGTPVN  600
SSWYKWALPS GTLDWGVNGE ELGRLRRSSS FELRSGGEEP DLSWVHSLTK ESPPEKIVTA  660
AMTSVGPSAT VPSGGGGDGD ASNANPQIDG HDQSAVLSAW LEQMQLDQTL TSLSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801953.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3YPQ30.0A0A2H3YPQ3_PHODC; zinc finger CCCH domain-containing protein 24
STRINGXP_008801953.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]